lineage | Count |
---|---|
lineage1.2.2.2 | 78 |
lineage4.3.4.2 | 4 |
lineage4.5 | 3 |
lineage3 | 19 |
lineage4.3.3 | 25 |
lineage2.2.1 | 29 |
lineage4.2.1 | 6 |
lineage4.6.1.1 | 2 |
lineage4.3.4.2.1 | 4 |
lineage2.2.2 | 3 |
8 | |
lineage4.3.2 | 3 |
lineage4.6.2.2 | 4 |
lineage4.2.2.2 | 6 |
lineage4.1.2.1 | 13 |
lineage4.4.1.1 | 3 |
lineage5 | 1 |
lineage1.2.1.2 | 2 |
La1.8.1 | 1 |
lineage4 | 2 |
lineage1.1.3.1 | 1 |
lineage3.1.2 | 7 |
lineage4.1.1.3 | 1 |
lineage3.1.2.1 | 1 |
lineage4.2.2 | 1 |
lineage2.2.1.1 | 4 |
lineage4.3.2.1 | 2 |
lineage4;lineage1.2.2.2 | 1 |
lineage4.4.2 | 4 |
lineage4.3.4.1 | 1 |
lineage4.6.1.2 | 1 |
lineage1.2.2 | 1 |
lineage4.1.2;lineage1.2.2.2 | 1 |
lineage4.2 | 1 |
lineage2.2 | 1 |
spoligotype | Count |
---|---|
None | 244 |
ID | Drug resistance | Lineage | Country iso2 | ERR9992949 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR9992961 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR9993165 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR10315613 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR13870408 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4830762 | Pre-XDR-TB | lineage4.5 | ir | ERR4830494 | MDR-TB | lineage1.2.2.2 | za | ERR4829951 | MDR-TB | lineage3 | pk | ERR4830548 | MDR-TB | lineage1.2.2.2 | None | SRR7517833 | Pre-XDR-TB | lineage4.3.3 | None | SRR8217910 | MDR-TB | lineage4.3.3 | None | ERR4830617 | Pre-XDR-TB | lineage2.2.1 | tm | ERR4830619 | MDR-TB | lineage4.2.1 | tm | ERR4830775 | MDR-TB | lineage4.2.1 | ir | ERR4830756 | MDR-TB | lineage4.2.1 | ir | ERR4830778 | Pre-XDR-TB | lineage4.5 | None | ERR7910913 | MDR-TB | lineage2.2.1 | md | ERR6358868 | MDR-TB | lineage4.6.1.1 | None | ERR9119963 | MDR-TB | lineage4.3.3 | None | ERR9992914 | XDR-TB | lineage1.2.2.2 | None | ERR9992893 | Pre-XDR-TB | lineage4.3.3 | None | ERR9992920 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR9992873 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR3132272 | MDR-TB | lineage4.3.4.2.1 | None | SRR1144774 | RR-TB | lineage2.2.2 | None | SRR14782483 | Pre-XDR-TB | lineage2.2.1 | None | SRR6930903 | MDR-TB | lineage1.2.2.2 | None | SAMN02053802 | MDR-TB | lineage1.2.2.2 | za | SRR1181296 | MDR-TB | None | SRR16370521 | Pre-XDR-TB | lineage2.2.1 | None | ERR4972478 | MDR-TB | lineage4.3.2 | None | ERR4872296 | XDR-TB | lineage2.2.1 | None | ERR4872179 | MDR-TB | lineage4.6.2.2 | None | ERR4831510 | Pre-XDR-TB | lineage3 | pk | ERR4831518 | Pre-XDR-TB | lineage3 | pk | ERR4972562 | MDR-TB | lineage4.3.2 | None | ERR4831626 | Pre-XDR-TB | lineage2.2.1 | vn | ERR4872214 | MDR-TB | lineage1.2.2.2 | None | SRR6856019 | MDR-TB | lineage1.2.2.2 | None | ERR5865743 | MDR-TB | lineage4.3.3 | None | ERR6052100 | MDR-TB | lineage4.3.3 | None | SAMEA2533390 | MDR-TB | lineage4.2.1 | uz | ERR9993170 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR1167378 | MDR-TB | lineage4.3.3 | None | ERR552495 | MDR-TB | lineage1.2.2.2 | sz | ERR7737662 | MDR-TB | lineage4.2.2.2 | None | ERR8976063 | MDR-TB | lineage1.2.2.2 | None | ERR9993042 | XDR-TB | lineage1.2.2.2 | None | ERR5866351 | MDR-TB | lineage2.2.1 | None | ERR5866135 | MDR-TB | lineage2.2.1 | None | ERR5917976 | Pre-XDR-TB | lineage4.3.3 | za | ERR3132132 | MDR-TB | lineage4.3.4.2.1 | None | ERR6879028 | MDR-TB | lineage4.1.2.1 | None | ERR9119577 | MDR-TB | lineage4.6.2.2 | None | ERR7911117 | MDR-TB | lineage2.2.2 | vn | ERR9992880 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR15368787 | MDR-TB | lineage4.5 | None | ERR9992926 | Pre-XDR-TB | lineage1.2.2.2 | None | SAMN01828251 | MDR-TB | lineage1.2.2.2 | za | SAMN02403583 | MDR-TB | lineage4.3.3 | za | SRR13423566 | MDR-TB | lineage2.2.1 | None | SRR2024881 | MDR-TB | lineage2.2.1 | cn | SRR16156781 | MDR-TB | lineage2.2.1 | None | ERR10748245 | MDR-TB | lineage4.3.3 | None | ERR038754 | MDR-TB | lineage4.4.1.1 | ug | ERR040120 | MDR-TB | lineage4.3.4.2.1 | ug | ERR067677 | MDR-TB | lineage4.2.1 | ru | ERR10225449 | MDR-TB | lineage3 | None | ERR1034613 | Pre-XDR-TB | lineage3 | pk | ERR1034733 | MDR-TB | lineage4.1.2.1 | pe | ERR1034903 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1035306 | Pre-XDR-TB | lineage4.3.3 | br | ERR10680177 | RR-TB | lineage5 | None | ERR10748207 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR10748249 | MDR-TB | lineage4.3.3 | None | ERR3287322 | MDR-TB | lineage4.1.2.1 | pe | ERR10748301 | MDR-TB | lineage2.2.1 | None | ERR10748525 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR114505 | MDR-TB | lineage1.2.2.2 | None | ERR1213890 | MDR-TB | lineage4.3.4.2.1 | rw | ERR3256177 | MDR-TB | lineage1.2.1.2 | ph | ERR3256178 | MDR-TB | lineage1.2.1.2 | ph | ERR10762322 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043106 | MDR-TB | lineage3 | None | ERR3287630 | MDR-TB | lineage4.3.3 | pe | ERR3287515 | MDR-TB | lineage4.1.2.1 | pe | ERR3287629 | MDR-TB | lineage4.3.3 | pe | ERR3287850 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR3335758 | MDR-TB | lineage3 | pk | ERR3335803 | Pre-XDR-TB | lineage3 | pk | ERR4011969 | MDR-TB | lineage4.2.2.2 | None | ERR4011974 | MDR-TB | lineage4.2.2.2 | None | ERR3794435 | MDR-TB | lineage2.2.1 | None | ERR4025001 | MDR-TB | lineage4.1.2.1 | None | ERR4423490 | MDR-TB | lineage4.3.3 | None | ERR4187655 | Other | La1.8.1 | None | ERR4423491 | MDR-TB | lineage4.3.3 | None | ERR4423543 | MDR-TB | lineage4.3.3 | None | ERR4423766 | MDR-TB | lineage4.6.2.2 | None | ERR4423544 | MDR-TB | lineage4.3.3 | None | ERR4423765 | MDR-TB | lineage4.6.2.2 | None | ERR4553427 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4553882 | Pre-XDR-TB | None | ERR4553510 | MDR-TB | lineage4 | None | ERR4553518 | MDR-TB | None | ERR4553582 | MDR-TB | None | ERR4553577 | Pre-XDR-TB | None | ERR4553605 | Pre-XDR-TB | None | ERR4553792 | MDR-TB | None | ERR4553789 | Pre-XDR-TB | None | ERR4796950 | Pre-XDR-TB | lineage2.2.1 | in | ERR4553952 | Pre-XDR-TB | lineage1.1.3.1 | None | ERR4796673 | Pre-XDR-TB | lineage3.1.2 | in | ERR4796733 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR4796779 | Pre-XDR-TB | lineage3.1.2 | in | ERR4796858 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4797869 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR4797168 | Pre-XDR-TB | lineage3.1.2.1 | in | ERR4797279 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797531 | Pre-XDR-TB | lineage3.1.2 | in | ERR4797755 | MDR-TB | lineage3 | in | ERR4798329 | MDR-TB | lineage4.2.2.2 | in | ERR4798268 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798568 | Pre-XDR-TB | lineage4.2.2 | in | ERR4798395 | MDR-TB | lineage4.4.1.1 | in | ERR4799347 | MDR-TB | lineage3 | in | ERR4799976 | Pre-XDR-TB | lineage3.1.2 | in | ERR4799522 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4800594 | Pre-XDR-TB | lineage3.1.2 | in | ERR4800158 | MDR-TB | lineage4.2.2.2 | None | ERR4800279 | MDR-TB | lineage1.2.2.2 | in | ERR4800595 | Pre-XDR-TB | lineage2.2.1 | in | ERR4808962 | MDR-TB | lineage1.2.2.2 | za | ERR4808891 | Pre-XDR-TB | lineage4.3.3 | za | ERR4808925 | RR-TB | lineage4.3.2.1 | za | ERR4808990 | MDR-TB | lineage1.2.2.2 | za | ERR4808981 | MDR-TB | lineage1.2.2.2 | None | ERR4808992 | MDR-TB | lineage1.2.2.2 | za | ERR4809013 | MDR-TB | lineage1.2.2.2 | za | ERR4809002 | MDR-TB | lineage1.2.2.2 | za | ERR4809016 | MDR-TB | lineage1.2.2.2 | za | ERR4809078 | MDR-TB | lineage4;lineage1.2.2.2 | za | ERR4809186 | MDR-TB | lineage1.2.2.2 | za | ERR4809084 | MDR-TB | lineage1.2.2.2 | za | ERR4809185 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR4809189 | MDR-TB | lineage1.2.2.2 | za | ERR4809187 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR4809203 | MDR-TB | lineage1.2.2.2 | za | ERR4809201 | MDR-TB | lineage1.2.2.2 | za | ERR4809231 | MDR-TB | lineage1.2.2.2 | za | ERR4809214 | MDR-TB | lineage1.2.2.2 | za | ERR4809248 | MDR-TB | lineage4.3.3 | za | ERR4809348 | MDR-TB | lineage1.2.2.2 | za | ERR4809274 | MDR-TB | lineage1.2.2.2 | za | ERR4809303 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR4810724 | MDR-TB | lineage4.4.2 | cn | ERR4809350 | MDR-TB | lineage1.2.2.2 | za | ERR4810763 | MDR-TB | lineage4.4.2 | cn | ERR4810766 | MDR-TB | lineage4.4.2 | cn | ERR4811562 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4813171 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5530521 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR4809027 | MDR-TB | lineage1.2.2.2 | za | ERR553134 | MDR-TB | lineage1.2.2.2 | sz | ERR5917973 | MDR-TB | lineage1.2.2.2 | None | ERR4813217 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813508 | RR-TB | lineage4.3.2 | None | ERR4813632 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR671851 | MDR-TB | lineage2.2.1 | cn | SRR2100352 | MDR-TB | lineage1.2.2.2 | None | SRR5266557 | MDR-TB | lineage2.2.1 | ru | ERR751488 | MDR-TB | lineage4 | pe | ERR6358869 | MDR-TB | lineage4.6.1.1 | None | SAMEA2534308 | MDR-TB | lineage4.2.1 | uz | SRR2101763 | MDR-TB | lineage1.2.2.2 | None | SRR2101757 | MDR-TB | lineage1.2.2.2 | None | ERR2184224 | MDR-TB | lineage4.1.2.1 | pe | ERR7911034 | MDR-TB | lineage2.2.1 | md | SRR1723838 | Pre-XDR-TB | lineage2.2.1 | cn | SRR5341247 | MDR-TB | lineage2.2.1 | in | SAMN02398697 | RR-TB | lineage2.2.2 | kr | ERR2510502 | MDR-TB | lineage3 | pk | SRR8651585 | MDR-TB | lineage4.4.2 | cn | ERR2510560 | Pre-XDR-TB | lineage3 | pk | ERR2510624 | MDR-TB | lineage3 | pk | SRR7585420 | Pre-XDR-TB | lineage3 | None | ERR8976089 | MDR-TB | lineage1.2.2.2 | None | ERR751609 | MDR-TB | lineage4.3.3 | pe | SAMN02585975 | MDR-TB | lineage1.2.2.2 | za | ERR2503477 | MDR-TB | lineage1.2.2.2 | None | ERR551920 | MDR-TB | lineage1.2.2.2 | sz | SRR6824615 | Pre-XDR-TB | lineage2.2.1 | cn | ERR6359044 | MDR-TB | lineage4.6.1.2 | None | SAMN02586055 | MDR-TB | lineage1.2.2.2 | za | ERR551329 | MDR-TB | lineage1.2.2.2 | sz | ERR2510219 | MDR-TB | lineage4.1.2.1 | pe | ERR2510289 | Pre-XDR-TB | lineage3 | None | ERR2510376 | MDR-TB | lineage3 | None | ERR2510425 | MDR-TB | lineage3 | pk | ERR2510433 | MDR-TB | lineage3 | pk | ERR2515342 | MDR-TB | lineage1.2.2.2 | za | ERR2515348 | MDR-TB | lineage1.2.2.2 | za | ERR2516447 | MDR-TB | lineage1.2.2 | nl | ERR2516929 | MDR-TB | lineage1.2.2.2 | gb | ERR2515465 | MDR-TB | lineage1.2.2.2 | za | ERR2515514 | MDR-TB | lineage1.2.2.2 | za | ERR2515777 | MDR-TB | lineage1.2.2.2 | za | ERR2516527 | Pre-XDR-TB | lineage4.3.3 | None | ERR2515648 | MDR-TB | lineage1.2.2.2 | za | ERR2515664 | MDR-TB | lineage4.3.2.1 | za | ERR2515749 | MDR-TB | lineage1.2.2.2 | za | ERR2517010 | Pre-XDR-TB | lineage2.2.1.1 | gb | SAMN02586077 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR2516618 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2515798 | MDR-TB | lineage1.2.2.2 | za | ERR2515802 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR2516067 | MDR-TB | lineage4.1.2;lineage1.2.2.2 | za | ERR2515797 | MDR-TB | lineage4.3.3 | za | ERR7911218 | Pre-XDR-TB | lineage2.2.1 | md | ERR2516673 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR2101675 | MDR-TB | lineage4.4.1.1 | None | ERR2515962 | MDR-TB | lineage1.2.2.2 | za | ERR2517063 | MDR-TB | lineage3 | gb | ERR2516729 | MDR-TB | lineage4.2 | nl | ERR2516820 | MDR-TB | lineage3.1.2 | gb | ERR2516057 | MDR-TB | lineage1.2.2.2 | za | ERR775298 | MDR-TB | lineage4.1.2.1 | pe | ERR2517095 | MDR-TB | lineage3.1.2 | gb | ERR2516824 | Pre-XDR-TB | lineage2.2.1.1 | gb | ERR2515131 | MDR-TB | lineage1.2.2.2 | za | ERR2516841 | Pre-XDR-TB | lineage2.2.1.1 | gb | ERR9119964 | MDR-TB | lineage4.3.3 | None | ERR2515163 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR8976062 | MDR-TB | lineage1.2.2.2 | None | ERR2515249 | MDR-TB | lineage1.2.2.2 | za | ERR2515252 | MDR-TB | lineage1.2.2.2 | za | ERR7911398 | MDR-TB | lineage2.2.1 | us | ERR551319 | MDR-TB | lineage1.2.2.2 | sz | ERR553321 | MDR-TB | lineage1.2.2.2 | sz | SRR23691415 | RR-TB | lineage2.2.1 | None | SRR23311000 | MDR-TB | lineage2.2 | None | ERR7911208 | Pre-XDR-TB | lineage4.3.3 | za | ERR550754 | MDR-TB | lineage1.2.2.2 | sz | ERR5866136 | MDR-TB | lineage2.2.1 | None |
---|