Rv1258c - c.-149G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
166 Sensitive
4 RR-TB
24 HR-TB
32 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 250 |
| lineage4.1.2.1;lineage4.3.4.2 | 6 |
| lineage4.1.2.1;lineage4.3.4.1 | 3 |
| lineage4.1.2.1;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 260 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14165091 | Sensitive | lineage4.1.2.1 | None | SRR15399232 | Sensitive | lineage4.1.2.1 | None | ERR2653209 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13583461 | HR-TB | lineage4.1.2.1;lineage4.3.4.2 | None | ERR7363104 | Sensitive | lineage4.1.2.1 | None | ERR7363058 | Sensitive | lineage4.1.2.1 | None | ERR1035219 | MDR-TB | lineage4.1.2.1 | pt | SRR29050899 | HR-TB | lineage4.1.2.1;lineage4.3.4.2 | None | ERR11067337 | Sensitive | lineage4.1.2.1 | None | ERR7363064 | Sensitive | lineage4.1.2.1 | None | ERR7363107 | Sensitive | lineage4.1.2.1 | None | SRR21240138 | Sensitive | lineage4.1.2.1 | None | SRR29231623 | Sensitive | lineage4.1.2.1 | None | SRR14164790 | Other | lineage4.1.2.1 | None | ERR1213912 | HR-TB | lineage4.1.2.1 | gn | ERR7363118 | Sensitive | lineage4.1.2.1 | None | ERR1213868 | MDR-TB | lineage4.1.2.1 | br | SRR14164460 | Sensitive | lineage4.1.2.1 | None | SRR15399226 | Other | lineage4.1.2.1 | None | SRR21689470 | Sensitive | lineage4.1.2.1 | None | ERR7363089 | Sensitive | lineage4.1.2.1;lineage4.3.4.1 | None | ERR7363021 | Sensitive | lineage4.1.2.1 | None | ERR1035346 | MDR-TB | lineage4.1.2.1 | br | ERR7363106 | Sensitive | lineage4.1.2.1 | None | SRR10851623 | Sensitive | lineage4.1.2.1 | None | ERR4814077 | Sensitive | lineage4.1.2.1 | None | SRR21239876 | Sensitive | lineage4.1.2.1 | None | ERR12544184 | Sensitive | lineage4.1.2.1 | None | ERR11082659 | Sensitive | lineage4.1.2.1 | None | SRR15399210 | Sensitive | lineage4.1.2.1 | None | ERR3132159 | HR-TB | lineage4.1.2.1 | None | SRR12931686 | Sensitive | lineage4.1.2.1 | None | SRR29051288 | MDR-TB | lineage4.1.2.1 | None | SRR19115708 | Sensitive | lineage4.1.2.1 | None | ERR2653128 | Sensitive | lineage4.1.2.1 | None | ERR7764388 | Sensitive | lineage4.1.2.1 | None | ERR7363079 | Sensitive | lineage4.1.2.1 | None | SRR29016963 | MDR-TB | lineage4.1.2.1 | None | ERR2653138 | MDR-TB | lineage4.1.2.1 | None | ERR4195228 | Sensitive | lineage4.1.2.1 | None | ERR4195603 | MDR-TB | lineage4.1.2.1 | None | ERR7363019 | Sensitive | lineage4.1.2.1 | None | ERR2653000 | Other | lineage4.1.2.1 | None | SRR29231060 | Other | lineage4.1.2.1 | None | ERR9121396 | HR-TB | lineage4.1.2.1 | None | SRR7131106 | Sensitive | lineage4.1.2.1 | None | ERR2510760 | Sensitive | lineage4.1.2.1 | None | ERR7363137 | Sensitive | lineage4.1.2.1 | None | SRR13583489 | MDR-TB | lineage4.1.2.1 | None | SRR14164681 | Sensitive | lineage4.1.2.1 | None | SRR13583307 | HR-TB | lineage4.1.2.1 | None | SRR29016970 | Sensitive | lineage4.1.2.1 | None | SRR19303860 | Sensitive | lineage4.1.2.1 | None | SRR21239965 | Sensitive | lineage4.1.2.1 | None | SRR22249701 | Sensitive | lineage4.1.2.1 | None | ERR7764347 | Sensitive | lineage4.1.2.1 | None | ERR4195430 | MDR-TB | lineage4.1.2.1 | None | SRR29016997 | HR-TB | lineage4.1.2.1 | None | SRR14164852 | Other | lineage4.1.2.1 | None | ERR7363017 | Sensitive | lineage4.1.2.1 | None | SRR29230832 | Sensitive | lineage4.1.2.1 | None | SRR10851693 | Sensitive | lineage4.1.2.1 | None | ERR11776021 | Other | lineage4.1.2.1 | None | SRR19303862 | Sensitive | lineage4.1.2.1 | None | SRR10851710 | Sensitive | lineage4.1.2.1 | None | ERR7764421 | Sensitive | lineage4.1.2.1 | None | SRR12931716 | Sensitive | lineage4.1.2.1 | None | SRR13591456 | Sensitive | lineage4.1.2.1 | None | SRR10851680 | Sensitive | lineage4.1.2.1 | None | SRR29017335 | Sensitive | lineage4.1.2.1 | None | ERR11068414 | Sensitive | lineage4.1.2.1 | None | SRR28859829 | Sensitive | lineage4.1.2.1 | None | SRR29050877 | RR-TB | lineage4.1.2.1;lineage4.3.4.2 | None | SRR14165004 | Sensitive | lineage4.1.2.1 | None | SRR7276688 | Sensitive | lineage4.1.2.1 | None | ERR4813841 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29017545 | Other | lineage4.1.2.1 | None | SRR15399222 | Other | lineage4.1.2.1 | None | ERR2653160 | MDR-TB | lineage4.1.2.1 | None | ERR4195686 | Sensitive | lineage4.1.2.1 | None | ERR7363127 | Sensitive | lineage4.1.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786872 | Sensitive | lineage4.1.2.1 | None | ERR4813748 | MDR-TB | lineage4.1.2.1 | None | ERR7363084 | Sensitive | lineage4.1.2.1 | None | SRR15399212 | Other | lineage4.1.2.1 | None | ERR4813886 | Sensitive | lineage4.1.2.1 | None | ERR4813961 | MDR-TB | lineage4.1.2.1 | br | ERR4814050 | Sensitive | lineage4.1.2.1 | br | ERR4814084 | Sensitive | lineage4.1.2.1 | br | ERR4814102 | Sensitive | lineage4.1.2.1 | None | ERR4813772 | HR-TB | lineage4.1.2.1 | br | ERR4813794 | MDR-TB | lineage4.1.2.1 | br | ERR4813960 | RR-TB | lineage4.1.2.1 | br | ERR4813963 | HR-TB | lineage4.1.2.1 | br | ERR4813976 | MDR-TB | lineage4.1.2.1 | br | ERR4813999 | Sensitive | lineage4.1.2.1 | br | ERR4814002 | Sensitive | lineage4.1.2.1 | br | ERR4814056 | Sensitive | lineage4.1.2.1 | None | ERR4814095 | Sensitive | lineage4.1.2.1 | None | ERR4814126 | Sensitive | lineage4.1.2.1 | None | ERR4813744 | Sensitive | lineage4.1.2.1 | br | ERR4813755 | Sensitive | lineage4.1.2.1 | br | ERR4813789 | MDR-TB | lineage4.1.2.1 | br | ERR4813803 | Sensitive | lineage4.1.2.1 | br | ERR4813857 | HR-TB | lineage4.1.2.1 | br | ERR4813901 | Sensitive | lineage4.1.2.1 | None | ERR4813903 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4813924 | MDR-TB | lineage4.1.2.1 | br | ERR4813928 | HR-TB | lineage4.1.2.1 | None | ERR4813986 | Sensitive | lineage4.1.2.1 | br | ERR9125917 | Sensitive | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR7363020 | Sensitive | lineage4.1.2.1 | None | ERR7363134 | Sensitive | lineage4.1.2.1 | None | ERR9125549 | Sensitive | lineage4.1.2.1 | None | ERR7363085 | Sensitive | lineage4.1.2.1 | None | ERR7363033 | Sensitive | lineage4.1.2.1 | None | ERR7363040 | Sensitive | lineage4.1.2.1 | None | SRR16058715 | Sensitive | lineage4.1.2.1 | None | ERR552839 | Other | lineage4.1.2.1 | de | ERR275218 | MDR-TB | lineage4.1.2.1 | pt | ERR1465816 | Sensitive | lineage4.1.2.1 | ch | ERR2516129 | MDR-TB | lineage4.1.2.1 | es | ERR2510766 | Sensitive | lineage4.1.2.1 | it | ERR2510811 | Sensitive | lineage4.1.2.1 | it | ERR4815693 | Other | lineage4.1.2.1 | gb | ERR4816529 | Sensitive | lineage4.1.2.1 | gb | ERR4816681 | Other | lineage4.1.2.1 | gb | ERR4818699 | Sensitive | lineage4.1.2.1 | gb | ERR4818939 | Sensitive | lineage4.1.2.1 | gb | SRR6045768 | Sensitive | lineage4.1.2.1 | gb | SRR29016975 | Sensitive | lineage4.1.2.1 | None | SRR10851721 | Other | lineage4.1.2.1 | None | SRR7131133 | Sensitive | lineage4.1.2.1 | None | ERR7363072 | Sensitive | lineage4.1.2.1 | None | SRR29016792 | Sensitive | lineage4.1.2.1 | None | ERR4813845 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11776007 | MDR-TB | lineage4.1.2.1 | None | SRR29231042 | Sensitive | lineage4.1.2.1 | None | ERR4195796 | HR-TB | lineage4.1.2.1 | None | SRR14164447 | Sensitive | lineage4.1.2.1 | None | SRR14164623 | Sensitive | lineage4.1.2.1 | None | ERR11068450 | Sensitive | lineage4.1.2.1 | None | ERR7363009 | Sensitive | lineage4.1.2.1 | None | ERR2516132 | HR-TB | lineage4.1.2.1 | None | ERR2653088 | MDR-TB | lineage4.1.2.1 | None | ERR11776005 | Sensitive | lineage4.1.2.1 | None | SRR14164720 | Sensitive | lineage4.1.2.1 | None | SRR13583424 | RR-TB | lineage4.1.2.1;lineage4.3.4.2 | None | ERR4813902 | Sensitive | lineage4.1.2.1 | None | ERR4813809 | MDR-TB | lineage4.1.2.1 | br | ERR4813898 | MDR-TB | lineage4.1.2.1 | None | ERR7363132 | Sensitive | lineage4.1.2.1;lineage4.3.4.2 | None | ERR7363077 | Sensitive | lineage4.1.2.1 | None | ERR7363093 | Sensitive | lineage4.1.2.1 | None | SRR14164999 | Sensitive | lineage4.1.2.1 | None | ERR10969145 | Sensitive | lineage4.1.2.1 | None | ERR4814049 | Sensitive | lineage4.1.2.1 | None | SRR13583363 | Sensitive | lineage4.1.2.1 | None | ERR4813826 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29051571 | HR-TB | lineage4.1.2.1 | None | ERR2653055 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11067842 | HR-TB | lineage4.1.2.1 | None | SRR29051536 | Other | lineage4.1.2.1 | None | SRR14164562 | Sensitive | lineage4.1.2.1 | None | SRR12931681 | Sensitive | lineage4.1.2.1 | None | ERR2652981 | Sensitive | lineage4.1.2.1 | None | ERR7363034 | Sensitive | lineage4.1.2.1 | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | ERR4813838 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR21240051 | Sensitive | lineage4.1.2.1 | None | ERR2653180 | MDR-TB | lineage4.1.2.1 | None | SRR7276705 | Sensitive | lineage4.1.2.1 | None | ERR7363066 | Sensitive | lineage4.1.2.1 | None | SRR14165101 | Sensitive | lineage4.1.2.1 | None | SRR12931776 | Sensitive | lineage4.1.2.1 | None | ERR11050542 | Sensitive | lineage4.1.2.1 | None | ERR1035362 | MDR-TB | lineage4.1.2.1 | br | ERR7363012 | Sensitive | lineage4.1.2.1 | None | ERR4813984 | Sensitive | lineage4.1.2.1 | br | ERR4814003 | Sensitive | lineage4.1.2.1 | br | ERR4814032 | Sensitive | lineage4.1.2.1 | br | ERR4814073 | Sensitive | lineage4.1.2.1 | None | ERR4831279 | Sensitive | lineage4.1.2.1 | None | ERR4813910 | MDR-TB | lineage4.1.2.1 | None | ERR4813926 | MDR-TB | lineage4.1.2.1 | br | ERR4813954 | MDR-TB | lineage4.1.2.1 | br | ERR4813994 | Sensitive | lineage4.1.2.1;lineage4.3.3 | br | ERR4813995 | Sensitive | lineage4.1.2.1;lineage4.3.4.1 | None | ERR4814094 | Sensitive | lineage4.1.2.1 | None | ERR4814093 | Sensitive | lineage4.1.2.1 | None | ERR4814117 | Sensitive | lineage4.1.2.1 | br | ERR4814118 | Sensitive | lineage4.1.2.1 | br | ERR2653179 | MDR-TB | lineage4.1.2.1 | None | SRR13583514 | HR-TB | lineage4.1.2.1 | None | SRR14164441 | Sensitive | lineage4.1.2.1 | None | SRR19303772 | Sensitive | lineage4.1.2.1 | None | ERR10969228 | HR-TB | lineage4.1.2.1 | None | SRR14164484 | Sensitive | lineage4.1.2.1 | None | SRR14164774 | Sensitive | lineage4.1.2.1 | None | ERR7363103 | Sensitive | lineage4.1.2.1 | None | SRR15399217 | Other | lineage4.1.2.1 | None | SRR14165092 | Sensitive | lineage4.1.2.1 | None | SRR12931780 | Sensitive | lineage4.1.2.1 | None | ERR3132105 | MDR-TB | lineage4.1.2.1 | None | SRR14164423 | Sensitive | lineage4.1.2.1 | None | ERR7363082 | Sensitive | lineage4.1.2.1 | None | SRR22048439 | Sensitive | lineage4.1.2.1 | None | SRR7131134 | Sensitive | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR14164917 | Other | lineage4.1.2.1 | None | SRR14164982 | Sensitive | lineage4.1.2.1 | None | SRR7276691 | Other | lineage4.1.2.1 | None | SRR29230835 | Sensitive | lineage4.1.2.1 | None | SRR29051581 | Sensitive | lineage4.1.2.1 | None | ERR2432988 | MDR-TB | lineage4.1.2.1 | br | ERR13289694 | Sensitive | lineage4.1.2.1 | None | SRR7131080 | Sensitive | lineage4.1.2.1 | None | SRR21240117 | Sensitive | lineage4.1.2.1 | None | ERR2653157 | MDR-TB | lineage4.1.2.1 | None | SRR29050634 | HR-TB | lineage4.1.2.1 | None | ERR7363130 | Sensitive | lineage4.1.2.1 | None | ERR7363133 | Sensitive | lineage4.1.2.1 | None | ERR7363016 | Sensitive | lineage4.1.2.1 | None | ERR9807023 | Sensitive | lineage4.1.2.1 | None | ERR12544192 | Sensitive | lineage4.1.2.1 | None | SRR29051580 | Sensitive | lineage4.1.2.1 | None | SRR29050695 | HR-TB | lineage4.1.2.1 | None | SRR16058556 | Sensitive | lineage4.1.2.1 | None | ERR11067459 | HR-TB | lineage4.1.2.1 | None | SRR15399218 | HR-TB | lineage4.1.2.1 | None | ERR7363090 | Sensitive | lineage4.1.2.1;lineage4.3.4.2 | None | SRR13591375 | Sensitive | lineage4.1.2.1 | None | SRR15399235 | Sensitive | lineage4.1.2.1 | None | ERR7363114 | Sensitive | lineage4.1.2.1 | None | ERR2653230 | RR-TB | lineage4.1.2.1 | None | ERR10969130 | Sensitive | lineage4.1.2.1 | None | SRR14164487 | Sensitive | lineage4.1.2.1 | None | SRR14164776 | Other | lineage4.1.2.1 | None | ERR7363038 | Sensitive | lineage4.1.2.1 | None | SRR14165005 | Other | lineage4.1.2.1 | None | ERR11050586 | Sensitive | lineage4.1.2.1 | None | ERR2653111 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4829078 | Sensitive | lineage4.1.2.1 | it | SRR13583465 | HR-TB | lineage4.1.2.1 | None | ERR4813831 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR14164416 | Other | lineage4.1.2.1 | None | SRR14164435 | Sensitive | lineage4.1.2.1 | None | ERR7363081 | Sensitive | lineage4.1.2.1 | None | ERR7363032 | Sensitive | lineage4.1.2.1 | None | ERR4813783 | MDR-TB | lineage4.1.2.1 | br | ERR4813742 | HR-TB | lineage4.1.2.1;lineage4.3.4.1 | None | ERR4813807 | HR-TB | lineage4.1.2.1 | br | ERR4813892 | Sensitive | lineage4.1.2.1 | br | ERR7363062 | Sensitive | lineage4.1.2.1 | None | SRR14164880 | Other | lineage4.1.2.1 | None | SRR22048387 | Sensitive | lineage4.1.2.1 | None | ERR9786969 | Sensitive | lineage4.1.2.1 | None | ERR4821809 | Other | lineage4.1.2.1 | gb |
|---|
