Run ID: SRR7131134
Sample name:
Date: 04-04-2023 18:46:27
Number of reads: 1733211
Percentage reads mapped: 99.99
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.36 |
mshA | 576468 | p.Val374Gly | missense_variant | 0.36 |
mshA | 576477 | p.Leu377Arg | missense_variant | 0.3 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.31 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoB | 761023 | p.Ile406Thr | missense_variant | 0.12 |
rpoC | 764534 | p.Arg389Gly | missense_variant | 0.18 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407489 | c.-149G>A | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472390 | n.545T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472558 | n.713G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472569 | n.724G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472581 | n.736A>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472827 | n.982G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474154 | n.500delG | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474509 | n.852G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474516 | n.859C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474528 | n.871T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474530 | n.873G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474539 | n.882C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474541 | n.884G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475146 | n.1489G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.29 |
inhA | 1674429 | c.228C>A | synonymous_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2153936 | p.Ala726Thr | missense_variant | 1.0 |
Rv1979c | 2222217 | c.947delA | frameshift_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
pepQ | 2860600 | c.-182A>C | upstream_gene_variant | 0.15 |
Rv2752c | 3065787 | c.405G>C | synonymous_variant | 0.12 |
Rv2752c | 3065865 | p.Leu109Phe | missense_variant | 0.25 |
Rv2752c | 3066299 | c.-108C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.19 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.67 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878175 | c.333G>A | synonymous_variant | 0.11 |
clpC1 | 4040032 | p.Val225Ile | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 0.98 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.56 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |