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SRA data
Rv1854c
- c.516A>C
Drug resistance types
1 Sensitive
2 RR-TB
27 HR-TB
20 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
7 Other
lineage Counts
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lineage
Count
lineage
Count
M.canetti;lineage2.1;lineage4.9
11
La3;M.canetti;lineage2.1;lineage4.9
7
M.canetti;lineage2.1;lineage4.9;lineage6.3
5
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
4
lineage4.9
3
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
3
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
2
lineage2.1;lineage4.9
2
lineage2.2
2
lineage2.1;lineage4.1.1.1;lineage6.3
2
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spoligotype Counts
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spoligotype
Count
spoligotype
Count
None
57
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Geographic prevalence
Country level data for this variant is available for 0 isolates.
+
−
Variant Proportion
Hover over a Country
0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
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Statisctical support
Not enough data to calculate support.
Samples
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ID
Drug resistance
Lineage
Country iso2
ID
Drug resistance
Lineage
Country iso2
ERR038268
HR-TB
La3;M.canetti;lineage4.8;lineage4.9
None
ERR124651
MDR-TB
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
None
ERR124652
HR-TB
La3;M.canetti;lineage2.1;lineage4.9
None
ERR126600
HR-TB
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
None
ERR126608
HR-TB
La3;M.canetti;lineage2.1;lineage4.9
None
ERR126618
MDR-TB
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
None
ERR161037
Other
lineage4.9
None
ERR234659
Other
None
ERR2693242
RR-TB
lineage2.1;lineage4.9
None
ERR323033
MDR-TB
La3;M.canetti;lineage2.1;lineage4.9
None
Showing 1 to 10 of 57 entries
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