Rv2416c - c.-10G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
3 RR-TB
0 HR-TB
84 MDR-TB
148 Pre-XDR-TB
5 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 176 |
| lineage4.3.3 | 7 |
| lineage4.1.1.3 | 4 |
| lineage4.5 | 16 |
| lineage1.2.2.2 | 2 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.4.2 | 1 |
| lineage4.2.1 | 3 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.8 | 6 |
| lineage2.2.1;lineage3 | 2 |
| lineage2.2.1;lineage4.8 | 3 |
| lineage3 | 1 |
| lineage4.2.1.1 | 3 |
| lineage1.2.1.2 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1;lineage3;lineage4.9 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.9 | 1 |
| lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 240 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR25515560 | MDR-TB | lineage2.2.1 | None | SRR24256041 | MDR-TB | lineage2.2.1 | None | SRR28394188 | MDR-TB | lineage4.3.3 | None | ERR7911072 | MDR-TB | lineage2.2.1 | za | ERR7911610 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR5917991 | MDR-TB | lineage2.2.1 | za | SRR24256032 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975741 | RR-TB | lineage2.2.1 | None | SRR10430361 | MDR-TB | lineage2.2.1 | None | SRR833216 | Pre-XDR-TB | lineage4.5 | None | ERR1873554 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2516249 | MDR-TB | lineage2.2.1 | be | ERR553021 | MDR-TB | lineage1.2.2.2 | sz | SRR6831862 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539585 | MDR-TB | lineage2.2.1 | None | ERR11043052 | MDR-TB | lineage2.2.1;lineage4 | None | ERR8025699 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266729 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093257 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796660 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796646 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797620 | Pre-XDR-TB | lineage2.2.1 | in | ERR551740 | MDR-TB | lineage2.2.1 | None | SRR18715489 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806992 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040452 | MDR-TB | lineage4.4.2 | None | ERR9807001 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093312 | MDR-TB | lineage2.2.1 | None | ERR11044112 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748322 | MDR-TB | lineage2.2.1 | None | ERR13266997 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748324 | MDR-TB | lineage2.2.1 | None | SRR7653609 | Pre-XDR-TB | lineage2.2.1 | None | SRR847775 | Pre-XDR-TB | lineage4.3.3 | za | ERR13261980 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266448 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284693 | MDR-TB | lineage2.2.1;lineage4 | None | SRR29681370 | MDR-TB | lineage2.2.1 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872350 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093239 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869274 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276379 | MDR-TB | lineage2.2.1 | None | ERR11082612 | MDR-TB | lineage4.2.1 | None | SRR14807658 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284068 | MDR-TB | lineage2.2.1 | None | SRR29096266 | Pre-XDR-TB | lineage2.2.1 | None | ERR550929 | Pre-XDR-TB | lineage2.2.1 | None | SRR30180260 | MDR-TB | lineage4.5 | None | ERR3794386 | MDR-TB | lineage2.2.1 | None | SRR25827368 | XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR29273984 | MDR-TB | lineage4.8 | None | ERR13261096 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827631 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR25827371 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | SRR1011522 | Pre-XDR-TB | lineage4.5 | None | ERR13261216 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056090 | Pre-XDR-TB | lineage2.2.1 | None | SRR23310910 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539710 | MDR-TB | lineage2.2.1 | None | SRR29681310 | MDR-TB | lineage2.2.1 | None | ERR4796440 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796399 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796905 | Pre-XDR-TB | lineage2.2.1 | in | ERR4863406 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797492 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797617 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798232 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796974 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798394 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797187 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799070 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798825 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797550 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797632 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800576 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797172 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799890 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799040 | XDR-TB | lineage2.2.1 | in | SRR28045254 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799165 | Pre-XDR-TB | lineage3 | in | ERR4798476 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798460 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796529 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798667 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800337 | Pre-XDR-TB | lineage2.2.1 | in | ERR13284443 | MDR-TB | lineage4.2.1.1 | None | SRR10525337 | MDR-TB | lineage4.8 | None | ERR8025477 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393813 | Pre-XDR-TB | lineage4.8 | None | SRR28706388 | MDR-TB | lineage2.2.1 | None | SRR28046321 | Pre-XDR-TB | lineage2.2.1 | None | SRR28046124 | Pre-XDR-TB | lineage2.2.1 | None | SRR11786873 | MDR-TB | lineage2.2.1 | None | SRR7592339 | Pre-XDR-TB | lineage4.8 | None | SAMEA2533570 | MDR-TB | lineage2.2.1 | uz | ERR11068857 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290917 | Pre-XDR-TB | lineage4.5 | None | SRR29539783 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748341 | MDR-TB | lineage2.2.1 | None | SRR29056077 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284517 | MDR-TB | lineage2.2.1 | None | SRR14801964 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681226 | MDR-TB | lineage2.2.1 | None | ERR10748110 | MDR-TB | lineage2.2.1 | None | SRR10303284 | MDR-TB | lineage2.2.1 | None | ERR4798839 | Pre-XDR-TB | lineage2.2.1 | None | ERR552403 | MDR-TB | lineage2.2.1 | None | ERR4796623 | MDR-TB | lineage2.2.1 | in | ERR4799578 | Pre-XDR-TB | lineage2.2.1 | in | SRR28394246 | MDR-TB | lineage4.3.3 | None | SRR16156797 | Pre-XDR-TB | lineage2.2.1 | None | SAMN01925657 | Pre-XDR-TB | lineage4.3.3 | None | SRR10040214 | MDR-TB | lineage4.5 | None | SRR10869098 | MDR-TB | lineage2.2.1 | None | SRR21576687 | MDR-TB | lineage1.2.1.2 | None | ERR8025680 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539158 | MDR-TB | lineage2.2.1 | None | ERR13261486 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715308 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539038 | MDR-TB | lineage2.2.1 | None | ERR5865854 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831722 | MDR-TB | lineage2.2.1 | None | SRR29093952 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291074 | Pre-XDR-TB | lineage4.5 | None | ERR13290830 | Pre-XDR-TB | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290848 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR13284379 | MDR-TB | lineage2.2.1 | None | SRR833219 | Pre-XDR-TB | lineage4.5 | None | ERR13266881 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267008 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056055 | Pre-XDR-TB | lineage2.2.1 | None | SRR1019192 | Pre-XDR-TB | lineage4.5 | None | SRR10869174 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261208 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055808 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261155 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082833 | RR-TB | lineage2.2.1 | None | ERR13290946 | MDR-TB | lineage4.5 | None | SRR25827827 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR29539370 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR29093442 | MDR-TB | lineage2.2.1 | None | SRR29539782 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR13290988 | Pre-XDR-TB | lineage4.5 | None | ERR552437 | MDR-TB | lineage2.2.1 | None | SRR29681424 | MDR-TB | lineage2.2.1 | None | ERR10748521 | MDR-TB | lineage2.2.1 | None | ERR4797952 | Pre-XDR-TB | lineage2.2.1 | in | ERR13288802 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276199 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798191 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798919 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798928 | MDR-TB | lineage2.2.1 | in | ERR4797556 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799765 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800062 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800428 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799303 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797469 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798056 | Pre-XDR-TB | lineage2.2.1 | in | ERR13284476 | MDR-TB | lineage2.2.1 | None | SRR29539684 | MDR-TB | lineage2.2.1 | None | SRR29539851 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR14802204 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156221 | MDR-TB | lineage2.2.1 | None | SRR28351502 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156737 | MDR-TB | lineage2.2.1 | None | SRR23311039 | Pre-XDR-TB | lineage2.2.1 | None | ERR7362012 | MDR-TB | lineage2.2.1 | None | SRR10869281 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR8975852 | XDR-TB | lineage2.2.1 | None | ERR2516514 | Pre-XDR-TB | lineage4.1.2 | pe | ERR2516496 | MDR-TB | lineage4.3.3 | pe | SRR16156783 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539584 | MDR-TB | lineage2.2.1 | None | SRR29056044 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827529 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | SRR28714180 | Pre-XDR-TB | lineage4.2.1.1 | None | ERR4796347 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | in | ERR4799206 | XDR-TB | lineage2.2.1 | in | SRR24710169 | MDR-TB | lineage2.2.1 | None | SRR1011521 | Pre-XDR-TB | lineage4.5 | None | SRR16156222 | MDR-TB | lineage2.2.1 | None | ERR8699107 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351487 | Pre-XDR-TB | lineage2.2.1 | None | SRR924224 | Pre-XDR-TB | lineage4.3.3 | None | SRR16156803 | Pre-XDR-TB | lineage2.2.1 | None | ERR7362005 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261248 | Pre-XDR-TB | lineage2.2.1 | None | SRR6485130 | MDR-TB | lineage2.2.1 | None | SRR16156242 | MDR-TB | lineage2.2.1 | None | ERR11043470 | MDR-TB | lineage2.2.1 | None | ERR4799552 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR550928 | MDR-TB | lineage2.2.1 | None | SRR29055826 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865853 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827615 | Pre-XDR-TB | lineage2.2.1 | None | ERR550928_ERR550929 | MDR-TB | lineage2.2.1 | None | ERR13284405 | MDR-TB | lineage4.2.1 | None | SRR25827394 | XDR-TB | lineage2.2.1;lineage3;lineage4.9 | None | ERR13284438 | MDR-TB | lineage2.2.1 | None | ERR11080875 | MDR-TB | lineage4.2.1.1 | None | ERR553020 | MDR-TB | lineage1.2.2.2 | None | SRR16156231 | MDR-TB | lineage2.2.1 | None | SRR29055592 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024838 | MDR-TB | lineage4.1.1.3 | None | ERR13291058 | Pre-XDR-TB | lineage4.5 | None | SRR29274205 | MDR-TB | lineage4.8 | None | ERR7975686 | MDR-TB | lineage4.3.3 | None | SRR16088562 | MDR-TB | lineage2.2.1 | None | ERR13291087 | Pre-XDR-TB | lineage4.5 | None | SRR28351464 | Pre-XDR-TB | lineage2.2.1 | None | SRR13120446 | MDR-TB | lineage2.2.1 | None | ERR13290971 | MDR-TB | lineage4.5 | None | ERR8774357 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681225 | MDR-TB | lineage2.2.1 | None | ERR551339 | MDR-TB | lineage2.2.1 | None | ERR13266624 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865369 | MDR-TB | lineage4.1.1.3 | None | ERR133843 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4798695 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797070 | Pre-XDR-TB | lineage2.2.1 | in | SRR1011518 | Pre-XDR-TB | lineage4.5 | None | ERR4798259 | Pre-XDR-TB | lineage2.2.1 | in | SRR29273943 | MDR-TB | lineage4.8 | None | ERR4799845 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797802 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797160 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799163 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4799521 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798972 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799336 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4799406 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796655 | MDR-TB | lineage2.2.1 | in | ERR4796973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796988 | Pre-XDR-TB | lineage2.2.1 | in | DRR474002 | RR-TB | lineage4.9 | None | SRR7652996 | MDR-TB | lineage4.2.1 | None | ERR13265094 | Pre-XDR-TB | lineage2.2.2 | None |
|---|
