ERR11043052
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR8025699
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093257
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29056077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798394
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMEA2533570
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR13284517
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801964
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681226
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827529
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR28714180
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR10748110
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13290848
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR4798695
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13290946
|
MDR-TB
|
lineage4.5
|
None
|
SRR24710169
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798259
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28394246
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR924224
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN01925657
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10040214
|
MDR-TB
|
lineage4.5
|
None
|
ERR13261248
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799765
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR16156242
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748322
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576687
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR10748324
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797556
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799552
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR7653609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798056
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11080875
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4798191
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4872350
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088562
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799163
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
ERR550929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799578
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797632
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827371
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR1011522
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR8975741
|
RR-TB
|
lineage2.2.1
|
None
|
ERR552437
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797617
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR1873554
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4797492
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR10748521
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797550
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799521
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29681370
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056090
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025477
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28706388
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516496
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13291058
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR29539710
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539782
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR29681225
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539038
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539158
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797160
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR23311039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796399
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7362012
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430361
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869281
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
ERR7911072
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR2516249
|
MDR-TB
|
lineage2.2.1
|
be
|
ERR4800337
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13290917
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR8699107
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539584
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29056044
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10303284
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552403
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796655
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800428
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796988
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR16156222
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13288802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975852
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799206
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR16156797
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551740
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715489
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040452
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR4799845
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9807001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7362005
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6485130
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093312
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715308
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR847775
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR13261980
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865854
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831722
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516514
|
Pre-XDR-TB
|
lineage4.1.2
|
pe
|
SRR13120446
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550928_ERR550929
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553020
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR16156231
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799303
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR553021
|
MDR-TB
|
lineage1.2.2.2
|
sz
|
ERR11082612
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR14807658
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798928
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796529
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR7975686
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4800062
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3794386
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827368
|
XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR4798919
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351464
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798667
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR133843
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR4799890
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797469
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266997
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310910
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273943
|
MDR-TB
|
lineage4.8
|
None
|
ERR4796905
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796974
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4863406
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796646
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798972
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28045254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799040
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR7652996
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4798825
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799165
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR14802204
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156221
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393813
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR13267008
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515560
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290971
|
MDR-TB
|
lineage4.5
|
None
|
ERR4797070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR30180260
|
MDR-TB
|
lineage4.5
|
None
|
SRR7592339
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR24256032
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827827
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798460
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29539585
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798476
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29055808
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796440
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13284438
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796623
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797172
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797802
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1011521
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR7911610
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR13276379
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681310
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156803
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799406
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4872322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827631
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4796660
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR10869098
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797620
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11043470
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044112
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025680
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550928
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799336
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
ERR5865853
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827394
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4.9
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284693
|
MDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR4024838
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4796347
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3.1.2.1
|
in
|
SRR833219
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4800576
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1019192
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4797952
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
DRR474002
|
RR-TB
|
lineage4.9
|
None
|
ERR11082833
|
RR-TB
|
lineage2.2.1
|
None
|
ERR8774357
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551339
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6865369
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR13276199
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798232
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1011518
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR13266624
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10525337
|
MDR-TB
|
lineage4.8
|
None
|
SRR29681424
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256041
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28394188
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28046124
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539684
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539851
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR13265094
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29539370
|
MDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR11786873
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156737
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055592
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR833216
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4796973
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11068857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539783
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917991
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR10748341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156783
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|