Rv3197A - c.-215delC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
3 RR-TB
2 HR-TB
14 MDR-TB
73 Pre-XDR-TB
12 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1.1 | 5 |
| lineage2.2.1 | 81 |
| lineage3 | 3 |
| lineage4.1.1.2 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4.4.2 | 1 |
| lineage4.6.5 | 2 |
| lineage4.5 | 2 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage4.3.3 | 2 |
| lineage2.2 | 1 |
| lineage1.2.1.2.1 | 3 |
| lineage2.2.2 | 3 |
| lineage4.4.1.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.6.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 116 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5918005 | RR-TB | lineage2.2.1.1 | za | ERR5918016 | XDR-TB | lineage2.2.1 | za | ERR5918018 | XDR-TB | lineage2.2.1 | za | ERR4811317 | Pre-XDR-TB | lineage2.2.1 | cn | ERR9993237 | XDR-TB | lineage2.2.1 | None | ERR2510270 | Pre-XDR-TB | lineage3 | None | SRR7898220 | Pre-XDR-TB | lineage2.2.1 | in | ERR4972539 | Pre-XDR-TB | lineage4.1.1.2 | None | SRR22137414 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748156 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044953 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR22137435 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273703 | MDR-TB | lineage4.1.2.1 | None | ERR5864940 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864943 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864945 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152895 | Pre-XDR-TB | lineage2.2.1 | None | SRR22757400 | MDR-TB | lineage2.2.1 | None | SRR21277788 | Sensitive | lineage4.4.2 | None | ERR1394278 | Pre-XDR-TB | lineage2.2.1 | None | SRR30034921 | XDR-TB | lineage4.1.1.2 | None | ERR4800034 | Pre-XDR-TB | lineage2.2.1 | in | SRR8439315 | MDR-TB | lineage2.2.1 | None | ERR11081171 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972306 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081248 | Sensitive | lineage4.1.2.1 | None | ERR9125253 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284954 | Sensitive | lineage4.1.2.1 | None | ERR8665770 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232402 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058404 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801314 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864949 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864939 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827956 | MDR-TB | lineage2.2.1 | None | ERR13267489 | RR-TB | lineage4.6.5 | None | ERR9806942 | Pre-XDR-TB | lineage2.2.1 | None | ERR13253330 | XDR-TB | lineage4.5 | None | SRR21277356 | Sensitive | lineage2.2.1 | None | SRR29274176 | MDR-TB | lineage4.1.2.1 | None | SRR7755720 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR5153810 | MDR-TB | lineage4.3.3 | None | DRR130059 | XDR-TB | lineage4.5 | None | ERR5864942 | Pre-XDR-TB | lineage2.2 | None | ERR5864950 | Pre-XDR-TB | lineage2.2.1 | None | SRR28240069 | MDR-TB | lineage2.2.1 | None | SRR22137473 | Pre-XDR-TB | lineage2.2.1 | None | ERR017786 | MDR-TB | lineage2.2.1 | None | SRR6650400 | Sensitive | lineage1.2.1.2.1 | None | SRR29093252 | Pre-XDR-TB | lineage2.2.1 | None | SRR22137411 | Pre-XDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277142 | Sensitive | lineage2.2.1 | None | ERR2510489 | RR-TB | lineage4.6.5 | pk | ERR2510561 | Pre-XDR-TB | lineage2.2.1 | pk | ERR4796596 | Pre-XDR-TB | lineage2.2.1 | in | DRR130066 | MDR-TB | lineage2.2.2 | None | ERR4800395 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR10869200 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830176 | MDR-TB | lineage2.2.1 | None | SRR29093854 | MDR-TB | lineage2.2.1 | None | ERR9806885 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827444 | XDR-TB | lineage3 | None | DRR130176 | Pre-XDR-TB | lineage2.2.2 | None | SRR28351380 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277794 | Other | lineage2.2.1 | None | SRR28240039 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515636 | MDR-TB | lineage4.4.1.1 | za | ERR6929520 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR28351475 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393372 | Pre-XDR-TB | lineage2.2.1 | None | ERR6052037 | Pre-XDR-TB | lineage2.2.1 | None | SRR22137474 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827875 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3 | None | ERR4800381 | XDR-TB | lineage2.2.1 | in | ERR9993175 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864946 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035013 | Pre-XDR-TB | lineage2.2.1 | za | ERR5864941 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068497 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827328 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR5864944 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261979 | HR-TB | lineage2.2.1 | None | ERR9806865 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864947 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993166 | XDR-TB | lineage2.2.1 | None | ERR5864948 | Pre-XDR-TB | lineage2.2.1 | None | SRR23316614 | MDR-TB | lineage2.2.1 | None | ERR8665768 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972172 | Sensitive | lineage1.2.1.2.1 | None | SRR16087913 | XDR-TB | lineage2.2.1 | None | SRR21277785 | Sensitive | lineage2.2.1 | None | ERR3639734 | Pre-XDR-TB | lineage2.2.1 | None | SRR24709934 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284146 | Pre-XDR-TB | lineage2.2.1 | None | SRR21732313 | Sensitive | lineage1.2.1.2.1 | None | ERR13266629 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397143 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093323 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258005 | MDR-TB | lineage2.2.2 | None | SRR22137446 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662402 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR14088377 | Pre-XDR-TB | lineage3 | None | ERR5864951 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798738 | XDR-TB | lineage2.2.1 | in | ERR5864938 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800209 | HR-TB | lineage2.2.1 | in | ERR4800296 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831097 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156718 | Pre-XDR-TB | lineage4.3.3 | None | SRR7755683 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR13267005 | XDR-TB | lineage2.2.1 | None | ERR3132211 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044467 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR3132215 | Sensitive | lineage4.6.2.2 | None | SRR28393383 | Sensitive | lineage2.2.1 | None |
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