ERR4010978
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR494999
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR16156766
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6052085
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9119630
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR5987432
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025527
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10112884
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR1162803
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025462
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10112857
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025530
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156721
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052063
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873490
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR10748257
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR10869206
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.3.2.1
|
None
|
ERR1873533
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR5758384
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025643
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR5987190
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156757
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869132
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4831579
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156287
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR7911645
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR16156290
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025461
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025498
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13289306
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025430
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025580
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873480
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage2.2.2
|
None
|
ERR5758430
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13285201
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
ERR5758449
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1873420
|
Other
|
lineage2.2.2
|
None
|
ERR5987310
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025709
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025601
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748147
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5987184
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29097068
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29056049
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758426
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025717
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR137246
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR13286203
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093141
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6052021
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758364
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093253
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911565
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025476
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025532
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911549
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5758409
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052120
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873497
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR10869290
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5917979
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5918002
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8975778
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR1035036
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR8025585
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025741
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025431
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13285282
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29096497
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5758419
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR10748157
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025584
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873541
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR16157103
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR5917988
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR7911603
|
MDR-TB
|
lineage2.2.2
|
za
|
SRR8237389
|
MDR-TB
|
lineage2.2.2
|
pg
|
ERR9030264
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR16156845
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025483
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052058
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025721
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4831570
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1873460
|
XDR-TB
|
lineage2.2.2
|
za
|
ERR8025646
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290646
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516019
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR2653132
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR8025562
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9120088
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5917999
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5987450
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093440
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911674
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR1162868
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156193
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR7911586
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29093422
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29093598
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29096606
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758415
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7361967
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29341518
|
MDR-TB
|
lineage4.3
|
None
|
ERR8025460
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.3.2.1
|
None
|
ERR1035031
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6362690
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911644
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR6362643
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025574
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911562
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1034648
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1034977
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR7911648
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR7911551
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025499
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869126
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873549
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025533
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873496
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR9030306
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11044187
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362202
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6362278
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025471
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR7911683
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR16156796
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6362386
|
MDR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR1873498
|
MDR-TB
|
lineage2.2.2
|
za
|
SRR16156768
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025491
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5865167
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR1873510
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5758421
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6362737
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6052112
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2652997
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR16156705
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869072
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13292505
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR234659
|
Other
|
|
None
|
ERR7911602
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025456
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873494
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6052113
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6362799
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052090
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025656
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093436
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992828
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993159
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025579
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13285280
|
HR-TB
|
lineage2.2.2
|
None
|
ERR7911665
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025418
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6832573
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR5987230
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873421
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873422
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873514
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6362218
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2653116
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR9119722
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869078
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911545
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5987219
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911546
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1873520
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6362858
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052080
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025651
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9119784
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025637
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29081572
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR5758424
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9993224
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911609
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR7911613
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1873466
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1873503
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025567
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29055880
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9030459
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911556
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR7737842
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR29539224
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5758388
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8975782
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025481
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13266041
|
MDR-TB
|
lineage3
|
None
|
SRR29096362
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992754
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR7911569
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1035294
|
MDR-TB
|
lineage4.1.2.1
|
br
|
ERR7911587
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1873401
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911640
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR8025629
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR6052118
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758373
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758474
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869245
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025691
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025607
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911544
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29094040
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1035077
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29539591
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5758459
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748120
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4831532
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025457
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6362282
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911567
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6052046
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869093
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992826
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR11798617
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869221
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10869238
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025432
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29097084
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR234590
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR212121
|
HR-TB
|
lineage4.9;lineage6.3
|
None
|
SRR29093570
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29096598
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025548
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025667
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1035041
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025557
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758417
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758379
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025424
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873486
|
MDR-TB
|
lineage2.2.2
|
za
|
SRR10869136
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4830922
|
Pre-XDR-TB
|
lineage3
|
np
|
ERR2515544
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR1873507
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025729
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR24256109
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6052070
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758367
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093147
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR16156189
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025635
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911554
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5987262
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8975784
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4831540
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR16156289
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR1873552
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR10748192
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093201
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911696
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR2707013
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
ERR9119792
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911547
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
za
|
ERR5758377
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156191
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR16156286
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR10869291
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758352
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR6358991
|
HR-TB
|
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3
|
None
|
ERR7911528
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025752
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993262
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR16156192
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR29096812
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093630
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758374
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992784
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025576
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6362503
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025740
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758368
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025761
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093301
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869267
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10869285
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13285279
|
HR-TB
|
lineage2.2.2
|
None
|
ERR5758390
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758437
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13288948
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290645
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29539209
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025593
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093872
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869184
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093493
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093529
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29093793
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748256
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR2516066
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5758341
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7361985
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025687
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025516
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025559
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873538
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5987392
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR6052028
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052061
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7361979
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869249
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869262
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156292
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025718
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911666
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29096604
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093889
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093343
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29056315
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1873536
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR2515466
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR067619
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR29093841
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093718
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29056107
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5758476
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18715463
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5758431
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758381
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5917986
|
XDR-TB
|
lineage2.2.2
|
za
|
ERR5758404
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16157101
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR29096342
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758393
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5918006
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR1035306
|
Pre-XDR-TB
|
lineage4.3.3
|
br
|
SRR29093241
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4011122
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052110
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758340
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758357
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6824489
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR7911591
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8975029
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR10869269
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13288925
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025466
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758412
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758370
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5758465
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2515684
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025620
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093861
|
HR-TB
|
lineage2.2.2
|
None
|
ERR5758429
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6362083
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5865166
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5917975
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5918010
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR9119691
|
MDR-TB
|
lineage2.2.2;lineage4
|
None
|
ERR13289351
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873463
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911629
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29093483
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093870
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093487
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1873436
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29093613
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025410
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025668
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911676
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5758413
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8975032
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13285190
|
MDR-TB
|
lineage2.2.2;lineage3
|
None
|
ERR8025694
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758435
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9119787
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911573
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025540
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29056308
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR5987224
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29538982
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975026
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4797110
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR1873468
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1873504
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR10680169
|
MDR-TB
|
lineage4.8
|
None
|
ERR1873397
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758391
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758378
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911639
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5987186
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025519
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748199
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758350
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025638
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911608
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025650
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911694
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR4830970
|
Pre-XDR-TB
|
lineage4.2.2.2
|
np
|
ERR9119725
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911568
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR2515768
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025634
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4872238
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR8025425
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9120001
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093791
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1873523
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6052034
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052099
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1035038
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR4831569
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156288
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR2515725
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6362283
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758386
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR14179705
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR1873430
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9806948
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1873521
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR24498059
|
XDR-TB
|
lineage3
|
None
|
ERR8025436
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1023454
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748121
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156792
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29230995
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4423532
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025479
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2707192
|
MDR-TB
|
lineage4.3.4.2
|
cd
|
ERR8025537
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911598
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR9120020
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025438
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093790
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873427
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9120021
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093677
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29097056
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873542
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025722
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4011116
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873495
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1873547
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR5987416
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025411
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025447
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873553
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5987410
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093792
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9030359
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29093634
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1873395
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758385
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758438
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2515864
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5758348
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758408
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911657
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8975710
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9030388
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6832638
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665864
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025644
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025659
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025738
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025582
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025689
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025735
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5987197
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869147
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869175
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11798558
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093166
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29096355
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873529
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1873426
|
HR-TB
|
lineage2.2.2
|
None
|
ERR10112879
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093324
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13290648
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758366
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869097
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873429
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1034995
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR1633796
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR8975667
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR2653134
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR10748159
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911595
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR10869100
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8686157
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR279468
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025712
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025695
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052073
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9992938
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR10869079
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748084
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758380
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025415
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4822407
|
MDR-TB
|
lineage2.2.1
|
ua
|
ERR9120000
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9120087
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869281
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
ERR13290647
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992975
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR10380209
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR1873525
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR9119822
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9119874
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869181
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025459
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025640
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025524
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025719
|
HR-TB
|
lineage2.2.2
|
None
|
ERR10112908
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911558
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR8025581
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4011123
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758355
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758423
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516005
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR10748198
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8025480
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025745
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052115
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02414982
|
Pre-XDR-TB
|
lineage2.2.2
|
se
|
SRR29096712
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911607
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR29539793
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3148169
|
XDR-TB
|
lineage4.1.2.1
|
mx
|
ERR10748242
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.1.2.1
|
None
|
ERR10610267
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5758407
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8025669
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6831708
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362506
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|