Rv3806c - p.Ile179Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
2 RR-TB
3 HR-TB
50 MDR-TB
29 Pre-XDR-TB
5 XDR-TB
7 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 31 |
| lineage4.3.4.1 | 1 |
| lineage4.6.1.2 | 15 |
| lineage3 | 1 |
| lineage4.8 | 11 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.4.1.2 | 2 |
| lineage4.4.1.1 | 5 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
| lineage4.3.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4.8 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.1.1;lineage4.1.2.1 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 97 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6832861 | MDR-TB | lineage2.2.1 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR29231001 | MDR-TB | lineage4.6.1.2 | None | SRR29231685 | MDR-TB | lineage4.6.1.2 | None | SRR6964569 | Pre-XDR-TB | lineage3 | None | SRR29231795 | MDR-TB | lineage4.6.1.2 | None | ERR4798043 | MDR-TB | lineage4.8 | in | ERR4798091 | MDR-TB | lineage4.8 | in | ERR4799169 | Pre-XDR-TB | lineage4.8 | in | ERR4799300 | Pre-XDR-TB | lineage4.8 | in | SRR29230786 | MDR-TB | lineage4.6.1.2 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798288 | MDR-TB | lineage2.2.1.1 | in | SRR28239971 | MDR-TB | lineage2.2.1 | None | ERR2707070 | MDR-TB | lineage4.6.1.2 | cd | ERR2707020 | MDR-TB | lineage4.6.1.2 | cd | ERR2707003 | MDR-TB | lineage4.4.1.2 | cd | ERR2707026 | MDR-TB | lineage4.6.1.2 | cd | ERR2707024 | MDR-TB | lineage4.6.1.2 | cd | SRR6824596 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11488941 | XDR-TB | lineage4.4.1.1 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR13266470 | Pre-XDR-TB | lineage4.8 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR6257011 | Pre-XDR-TB | lineage2.2.1 | ru | SRR11972293 | MDR-TB | lineage2.2.1 | None | SRR25207262 | RR-TB | lineage2.2.1 | None | SRR29016881 | MDR-TB | lineage4 | None | ERR11488861 | XDR-TB | lineage4.4.1.1 | None | ERR6358905 | MDR-TB | lineage4.6.1.2 | None | SRR6257052 | Pre-XDR-TB | lineage2.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4798828 | Pre-XDR-TB | lineage4.8 | in | SRR12420758 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710045 | XDR-TB | lineage2.2.1 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR25207176 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR23691416 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772620 | Pre-XDR-TB | lineage4.3.3 | None | ERR12916911 | Pre-XDR-TB | lineage2.2.1 | None | ERR015610 | MDR-TB | lineage2.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR23340096 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827607 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | SRR5153612 | Pre-XDR-TB | lineage2.2.1 | None | SRR13120450 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3014592 | Pre-XDR-TB | lineage4.6.1.2 | None | SRR28706681 | Pre-XDR-TB | lineage2.2.1 | None | ERR2707132 | MDR-TB | lineage4.6.1.2 | cd | ERR229918 | MDR-TB | lineage2.2.1 | ru | ERR067696 | MDR-TB | lineage2.2.1 | ru | ERR137282 | MDR-TB | lineage2.2.1 | ru | ERR234668 | MDR-TB | lineage2.2.1 | ru | SRR29231761 | MDR-TB | lineage4.4.1.2 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR1654693 | MDR-TB | lineage4.6.1.2 | None | ERR4553568 | MDR-TB | lineage4 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR1654669 | MDR-TB | lineage4.6.1.2 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR23310859 | MDR-TB | lineage2.2.1 | None | ERR11488900 | XDR-TB | lineage4.4.1.1 | None | ERR13289431 | MDR-TB | lineage2.2.1 | None | SRR6930899 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865775 | Pre-XDR-TB | lineage4.1.1;lineage4.1.2.1 | None | ERR4178219 | Pre-XDR-TB | lineage4.1.1;lineage4.1.2.1 | None | ERR3273105 | MDR-TB | lineage2.2.1.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR29231826 | MDR-TB | lineage4.6.1.2 | None | SRR6785511 | MDR-TB | lineage2.2.1 | None | ERR027447 | MDR-TB | lineage2.2.1 | ru | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR22175263 | Pre-XDR-TB | lineage4.8 | None | ERR4872182 | MDR-TB | lineage4.1.1.1 | None | ERR4797800 | MDR-TB | lineage4.8 | in | ERR4798005 | Pre-XDR-TB | lineage4.8 | in | ERR4799796 | XDR-TB | lineage4.8 | in | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR11488791 | MDR-TB | lineage4.4.1.1 | None | ERR4810949 | Pre-XDR-TB | lineage2.2.1 | cn | SRR28351345 | Pre-XDR-TB | lineage4.8 | None | SRR7517732 | MDR-TB | lineage3.1.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR4827420 | MDR-TB | lineage2.2.1 | None | ERR1199105 | MDR-TB | lineage4.6.1.2 | cd | SRR10306015 | RR-TB | lineage2.2.1 | None | SRR25207371 | Pre-XDR-TB | lineage2.2.1 | None | ERR234566 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR038754 | MDR-TB | lineage4.4.1.1 | ug | ERR9119580 | MDR-TB | lineage4.1.1.1 | None | ERR229980 | MDR-TB | lineage2.2.1 | ru | SRR16087942 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
