Rv3854c - c.-740delC
Drug resistance types
173 Sensitive
97 RR-TB
7 HR-TB
18 MDR-TB
11 Pre-XDR-TB
1 XDR-TB
55 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 302 |
| lineage4.5 | 12 |
| lineage2.2.1 | 5 |
| lineage4.9;lineage2.2.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage1.1.3.2 | 1 |
| lineage1.1.2 | 6 |
| lineage4.1.2.1 | 15 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage2.2.1;lineage1.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2;lineage3;lineage1.1.3.2 | 1 |
| lineage4.4.1.1;lineage3 | 2 |
| lineage7 | 1 |
| lineage4;lineage3.1.2.1;lineage2.2.1;lineage1.2.2.2 | 1 |
| lineage4.2.1 | 2 |
| lineage1.1.1 | 3 |
| lineage4.9;lineage4.3.4.2.1;lineage4.3.4.1;lineage3.1.1;lineage2.2.1 | 1 |
| lineage4.7;lineage3 | 2 |
| lineage4.3.2.1;lineage3 | 1 |
| lineage3.1.2.1 | 1 |
| lineage3.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 362 |
Geographic prevalence
Country level data for this variant is available for 275 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR4035523 | RR-TB | lineage3 | za | SRR4035490 | RR-TB | lineage3 | za | ERR4828584 | Sensitive | lineage4.5 | vn | ERR4822010 | Other | lineage3 | gb | ERR2514868 | Sensitive | lineage3 | gb | ERR2514054 | Sensitive | lineage3 | gb | ERR2446567 | Sensitive | lineage3 | nl | SRR6045109 | Sensitive | lineage3 | gb | SRR4035501 | RR-TB | lineage3 | za | SRR4035497 | RR-TB | lineage3 | None | SRR4035492 | RR-TB | lineage3 | za | ERR1023452 | Sensitive | lineage3 | None | SRR4035489 | RR-TB | lineage3 | za | ERR4810768 | Sensitive | lineage2.2.1 | cn | ERR4831484 | Pre-XDR-TB | lineage3 | None | ERR4814594 | Sensitive | lineage3 | gb | ERR8700381 | Sensitive | lineage3 | None | ERR4828603 | Sensitive | lineage4.5 | vn | ERR2517634 | Sensitive | lineage3 | nl | SRR5818602 | MDR-TB | lineage3 | dj | SAMN02414945 | MDR-TB | lineage3 | se | SRR2101562 | Sensitive | lineage3 | None | ERR1034938 | Sensitive | lineage3 | za | ERR2512430 | Sensitive | lineage3 | gb | SRR2100618 | Sensitive | lineage3 | None | SRR4036021 | RR-TB | lineage3 | za | SAMN02585948 | Sensitive | lineage4.9;lineage2.2.1 | za | SRR4035498 | RR-TB | lineage3 | za | SRR4035536 | RR-TB | lineage3 | za | ERR163976 | Other | lineage3 | mw | ERR4815319 | Other | lineage4.1.1.3 | gb | ERR8699206 | Sensitive | lineage3 | None | ERR4800021 | Sensitive | lineage3 | in | SRR4035524 | RR-TB | lineage3 | za | ERR1035028 | MDR-TB | lineage3 | za | ERR8975874 | Sensitive | lineage3 | None | SRR4035546 | RR-TB | lineage3 | za | ERR4828587 | Sensitive | lineage4.5 | vn | ERR8975757 | RR-TB | lineage3 | None | ERR2514799 | Sensitive | lineage3 | gb | ERR182032 | Other | lineage3 | mw | ERR4816512 | Sensitive | lineage3 | gb | SRR4035534 | RR-TB | lineage3 | None | ERR2513563 | Sensitive | lineage3 | gb | ERR2515188 | Sensitive | lineage3 | za | ERR2514158 | Sensitive | lineage3 | gb | ERR2513327 | Sensitive | lineage3 | gb | SRR4035544 | RR-TB | lineage3 | za | ERR181750 | Sensitive | lineage1.1.3.2 | None | ERR3275929 | Sensitive | lineage3 | nl | ERR4797609 | Sensitive | lineage3 | in | ERR2512737 | Sensitive | lineage3 | gb | ERR2515744 | Sensitive | lineage3 | za | ERR400402 | Sensitive | lineage3 | gb | SRR1723469 | MDR-TB | lineage2.2.1 | cn | ERR4828564 | Sensitive | lineage4.5 | vn | SRR4035511 | RR-TB | lineage3 | za | SRR4035504 | RR-TB | lineage3 | za | ERR8686578 | Sensitive | lineage3 | None | SRR6045343 | Sensitive | lineage3 | None | ERR4817213 | Other | lineage3 | gb | ERR8686580 | Sensitive | lineage3 | None | ERR4819916 | HR-TB | lineage1.1.2 | gb | ERR2515254 | Sensitive | lineage3 | None | SRR2101422 | Sensitive | lineage3 | None | SRR4035512 | RR-TB | lineage3 | za | ERR3287540 | MDR-TB | lineage4.1.2.1 | None | ERR3275393 | Sensitive | lineage3 | nl | ERR3276096 | Sensitive | lineage3 | nl | ERR2512762 | Sensitive | lineage3 | gb | ERR8975621 | Sensitive | lineage3 | None | ERR8699225 | Sensitive | lineage3 | None | ERR8975814 | Sensitive | lineage3 | None | ERR4798506 | Sensitive | lineage3 | in | SRR4035553 | RR-TB | lineage3 | za | SRR5818634 | MDR-TB | lineage3 | dj | SRR4035513 | RR-TB | lineage3 | za | ERR4828525 | Sensitive | lineage4.5 | vn | SRR4035495 | RR-TB | lineage3 | za | SRR4036011 | RR-TB | lineage3 | za | SRR4035537 | RR-TB | lineage3 | za | ERR1200655 | Sensitive | lineage3 | et | SRR4036013 | RR-TB | lineage3 | za | SRR5818674 | Sensitive | lineage3 | dj | SRR2100465 | Sensitive | lineage4.5 | None | ERR4815782 | Sensitive | lineage3 | gb | ERR4828429 | Sensitive | lineage4.5;lineage2.2.1 | vn | ERR161053 | Other | lineage3 | mw | ERR4812205 | Sensitive | lineage4.1.2.1 | pe | SRR2100637 | Other | lineage3 | None | SAMN02414929 | Sensitive | lineage3 | se | ERR1035020 | Sensitive | lineage3 | za | SRR5818603 | Sensitive | lineage3 | dj | ERR4818814 | Sensitive | lineage3 | gb | SAMN02350454 | Sensitive | lineage3 | za | ERR2517438 | Other | lineage3 | nl | ERR190391 | Other | lineage3 | mw | ERR1023309 | Sensitive | lineage3 | None | ERR176576 | Other | lineage3 | mw | SRR2101214 | Sensitive | lineage3 | None | ERR4830497 | RR-TB | lineage3 | za | SRR4035541 | RR-TB | lineage3 | za | ERR037482 | Other | lineage3 | mw | ERR126633 | Other | lineage3 | mw | ERR3276078 | Other | lineage1.1.2 | nl | SRR4035514 | RR-TB | lineage3 | None | ERR3275493 | Sensitive | lineage3 | nl | SRR6824456 | MDR-TB | lineage2.2.1 | cn | ERR181773 | Other | lineage3 | mw | ERR4798184 | Pre-XDR-TB | lineage3 | in | ERR4831791 | HR-TB | lineage2.2.1;lineage1.1.1 | vn | ERR2514552 | Sensitive | lineage3 | None | ERR2515253 | Sensitive | lineage3 | za | ERR245849 | Other | lineage3 | mw | ERR4820059 | Other | lineage3 | None | ERR4798849 | Sensitive | lineage3 | in | SRR4036012 | RR-TB | lineage3 | za | SRR4035494 | RR-TB | lineage3 | None | ERR245682 | Other | lineage3 | mw | SRR4036020 | RR-TB | lineage3 | za | ERR5918105 | RR-TB | lineage3 | za | SRR4035556 | RR-TB | lineage3 | za | ERR8975374 | RR-TB | lineage3 | None | SRR4035529 | RR-TB | lineage3 | za | ERR4822478 | HR-TB | lineage1.1.2 | de | ERR4813103 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4828598 | Sensitive | lineage4.5 | vn | ERR4800224 | Sensitive | lineage3 | in | ERR8686159 | Sensitive | lineage3 | None | ERR3275795 | Sensitive | lineage3 | nl | ERR4798496 | Sensitive | lineage3 | in | ERR216906 | Other | lineage3 | None | SRR2101613 | Sensitive | lineage3 | None | SRR5818678 | HR-TB | lineage3 | dj | SRR2100380 | Sensitive | lineage3 | None | SRR4035540 | MDR-TB | lineage3 | None | ERR4828546 | Sensitive | lineage4.5 | vn | ERR181766 | Other | lineage3 | mw | ERR4812020 | Sensitive | lineage4.1.2.1 | pe | SRR4036010 | RR-TB | lineage3 | za | ERR3276286 | Sensitive | lineage3 | nl | SRR4036009 | RR-TB | lineage3 | za | ERR4821752 | Sensitive | lineage3 | gb | ERR176646 | Other | lineage3 | mw | ERR4828761 | Sensitive | lineage4.5 | None | ERR4819620 | Sensitive | lineage3 | gb | ERR552914 | HR-TB | lineage2.2.1 | de | ERR3275964 | Sensitive | lineage3 | nl | SRR6824324 | Other | lineage4.5 | None | SRR4035545 | RR-TB | lineage3 | za | ERR245753 | Other | lineage3 | mw | ERR8975716 | RR-TB | lineage3 | None | ERR2512465 | Sensitive | lineage4.1.1.2 | gb | ERR036198 | Other | lineage4.3.4.2;lineage3;lineage1.1.3.2 | None | SRR4035509 | RR-TB | lineage3 | za | ERR2446501 | Sensitive | lineage3 | nl | ERR2515683 | MDR-TB | lineage3 | None | ERR3275714 | Sensitive | lineage3 | nl | ERR245722 | Other | lineage3 | mw | ERR4813372 | MDR-TB | lineage4.1.2.1 | pe | SRR4035505 | RR-TB | lineage3 | za | SAMN02414985 | Sensitive | lineage3 | se | SRR2101359 | Sensitive | lineage4.4.1.1;lineage3 | None | ERR4813172 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR8699764 | Sensitive | lineage3 | None | ERR8975156 | Sensitive | lineage3 | None | SRR5818639 | RR-TB | lineage3 | dj | SRR4035496 | RR-TB | lineage3 | za | ERR036209 | Other | lineage3 | mw | ERR2510402 | Pre-XDR-TB | lineage3 | pk | SRR3675469 | Sensitive | lineage3 | gb | SRR4035542 | RR-TB | lineage3 | None | ERR1023494 | Sensitive | lineage3 | None | ERR2503509 | Other | lineage1.1.2 | fi | SRR4035548 | RR-TB | lineage3 | za | ERR8686169 | RR-TB | lineage3 | None | ERR2516688 | Sensitive | lineage3 | pe | SRR2101810 | Sensitive | lineage3 | None | ERR181806 | Other | lineage3 | mw | ERR216939 | Other | lineage3 | mw | SRR4035551 | RR-TB | lineage3 | za | ERR4819836 | Sensitive | lineage3 | gb | ERR4811784 | Sensitive | lineage4.1.2.1 | pe | SRR4036016 | RR-TB | lineage3 | za | SRR2100594 | Sensitive | lineage3 | None | SRR4036028 | RR-TB | lineage3 | za | SRR4036008 | RR-TB | lineage3 | za | ERR4830528 | RR-TB | lineage3 | za | ERR2517290 | Sensitive | lineage3 | nl | ERR2517184 | Sensitive | lineage3 | nl | SRR4035538 | RR-TB | lineage3 | za | ERR4819268 | Sensitive | lineage3 | gb | ERR4812387 | Sensitive | lineage4.1.2.1 | pe | ERR3275886 | Sensitive | lineage1.1.2 | nl | ERR163945 | Other | lineage3 | mw | ERR3275955 | Sensitive | lineage3 | nl | SRR4035533 | RR-TB | lineage3 | None | SRR2101358 | Sensitive | lineage4.4.1.1;lineage3 | None | ERR400451 | Sensitive | lineage3 | gb | ERR212139 | Other | lineage3 | mw | ERR245830 | Other | lineage3 | mw | ERR5918017 | RR-TB | lineage3 | za | ERR036195 | Other | lineage3 | mw | ERR1750891 | Sensitive | lineage3 | zw | ERR1023429 | Sensitive | lineage3 | None | ERR181435 | Sensitive | lineage7 | dj | ERR2512658 | Sensitive | lineage3 | gb | SAMN02586095 | RR-TB | lineage3 | za | SRR4036006 | RR-TB | lineage3 | za | ERR2510621 | MDR-TB | lineage3 | pk | SRR4035527 | RR-TB | lineage3 | za | ERR8975513 | RR-TB | lineage3 | None | ERR4799036 | Pre-XDR-TB | lineage4;lineage3.1.2.1;lineage2.2.1;lineage1.2.2.2 | in | ERR8686590 | Sensitive | lineage3 | None | SRR4035508 | RR-TB | lineage3 | za | ERR161118 | Other | lineage3 | mw | ERR2184247 | Sensitive | lineage4.1.2.1 | pe | ERR1200647 | HR-TB | lineage3 | None | SRR2101217 | Sensitive | lineage3 | None | ERR2446170 | Sensitive | lineage3 | nl | SRR4036024 | RR-TB | lineage3 | za | SAMN02584650 | Pre-XDR-TB | lineage4.2.1 | md | ERR1633834 | Sensitive | lineage3 | za | SRR4035516 | RR-TB | lineage3 | None | SRR4035525 | RR-TB | lineage3 | za | ERR1750892 | Sensitive | lineage3 | zw | SRR5818656 | Sensitive | lineage3 | None | ERR3275815 | Sensitive | lineage3 | nl | SRR4035550 | RR-TB | lineage3 | za | ERR037488 | Other | lineage3 | mw | ERR1023315 | Sensitive | lineage3 | None | SRR6046905 | Other | lineage3 | gb | ERR4818850 | Sensitive | lineage3 | gb | ERR161061 | Other | lineage3 | mw | ERR4812352 | MDR-TB | lineage4.1.2.1 | pe | ERR2677424 | RR-TB | lineage3 | de | SRR4036019 | RR-TB | lineage3 | za | ERR4829099 | Other | lineage3 | dj | ERR2515162 | Sensitive | lineage3 | za | ERR4830427 | Sensitive | lineage1.1.1 | vn | SRR4036015 | RR-TB | lineage3 | za | SRR4035503 | RR-TB | lineage3 | za | ERR108163 | Sensitive | lineage3 | za | SRR4035552 | RR-TB | lineage3 | za | ERR4797753 | XDR-TB | lineage3 | in | SRR6045240 | Other | lineage3 | gb | ERR245678 | Other | lineage3 | mw | ERR181797 | Other | lineage3 | mw | ERR2677420 | MDR-TB | lineage3 | de | ERR8699801 | Sensitive | lineage3 | None | SRR2100137 | Sensitive | lineage3 | None | ERR4818966 | Sensitive | lineage3 | gb | ERR212024 | Other | lineage3 | mw | ERR161072 | Other | lineage3 | mw | ERR3287697 | Sensitive | lineage4.1.2.1 | pe | SRR4035559 | Sensitive | lineage3 | None | ERR176716 | Other | lineage3 | mw | SRR4036023 | RR-TB | lineage3 | za | ERR2513256 | Sensitive | lineage2.2.1 | gb | ERR4817909 | Sensitive | lineage3 | gb | SRR4035558 | RR-TB | lineage3 | za | SRR2100507 | Sensitive | lineage3 | None | ERR036185 | MDR-TB | lineage4.9;lineage4.3.4.2.1;lineage4.3.4.1;lineage3.1.1;lineage2.2.1 | None | SAMN02584661 | Pre-XDR-TB | lineage4.2.1 | md | SRR4035493 | RR-TB | lineage3 | za | ERR1633849 | Sensitive | lineage4.7;lineage3 | za | ERR2515610 | Sensitive | lineage3 | za | SRR4035549 | HR-TB | lineage3 | None | ERR4830516 | RR-TB | lineage3 | None | ERR3335725 | RR-TB | lineage3 | pk | SRR4035528 | RR-TB | lineage3 | za | ERR4799033 | Sensitive | lineage3 | in | ERR2514334 | Sensitive | lineage3 | gb | ERR8699796 | Sensitive | lineage4.3.2.1;lineage3 | None | ERR2446214 | Sensitive | lineage3 | nl | ERR245793 | Other | lineage3 | mw | SRR4036014 | RR-TB | lineage3 | za | SRR6045958 | Other | lineage3 | gb | ERR4831376 | Sensitive | lineage3 | de | SRR4035530 | RR-TB | lineage3 | za | ERR181751 | Other | lineage3 | mw | ERR4820388 | Sensitive | lineage3 | gb | ERR4799065 | Sensitive | lineage3 | in | SRR4035522 | RR-TB | lineage3 | za | ERR1035144 | Sensitive | lineage3 | sa | ERR2199827 | Sensitive | lineage3 | de | ERR2515487 | Sensitive | lineage3 | za | ERR245669 | Other | lineage3 | mw | SRR4035502 | RR-TB | lineage3 | za | ERR4818105 | Sensitive | lineage3 | None | ERR3275441 | Sensitive | lineage3 | nl | SRR4035500 | RR-TB | lineage3 | za | ERR2514401 | Other | lineage3 | gb | ERR4796886 | Sensitive | lineage3 | in | SRR2100192 | Sensitive | lineage3 | None | SRR4036017 | RR-TB | lineage3 | za | ERR3275916 | Sensitive | lineage3 | nl | ERR2515526 | Sensitive | lineage3 | za | ERR176523 | Other | lineage3 | mw | ERR108164 | Sensitive | lineage3 | za | ERR1213917 | Sensitive | lineage3 | pk | SRR4036027 | RR-TB | lineage3 | za | ERR1023414 | Sensitive | lineage3 | None | ERR4809338 | RR-TB | lineage3 | za | SRR2100112 | Sensitive | lineage3 | None | ERR4797286 | Sensitive | lineage3.1.2.1 | in | ERR212029 | Sensitive | lineage3.1.1 | mw | ERR8699856 | Sensitive | lineage3 | None | SRR2100237 | Sensitive | lineage3 | None | SRR4035507 | RR-TB | lineage3 | za | ERR4821546 | Other | lineage3 | gb | SRR2100117 | Sensitive | lineage3 | None | SRR4036026 | RR-TB | lineage3 | za | SRR4036022 | RR-TB | lineage3 | za | ERR3287559 | MDR-TB | lineage4.1.2.1 | None | ERR2515437 | Sensitive | lineage3 | za | ERR2184229 | Sensitive | lineage4.1.2.1 | pe | SRR4035555 | RR-TB | lineage3 | za | ERR2677422 | MDR-TB | lineage3 | de | SRR4035539 | RR-TB | lineage3 | za | ERR3275687 | Sensitive | lineage3 | nl | SRR4036025 | MDR-TB | lineage3 | None | SRR2101194 | Sensitive | lineage3 | None | ERR8975082 | Sensitive | lineage3 | None | ERR8700415 | Sensitive | lineage3 | None | ERR1035046 | Pre-XDR-TB | lineage4.7;lineage3 | za | ERR4797470 | Sensitive | lineage3 | in | SRR6045110 | Other | lineage3 | None | SRR6046291 | Other | lineage3 | None | SRR4035491 | RR-TB | lineage3 | za | ERR8699774 | Sensitive | lineage3 | None | ERR4828536 | Sensitive | lineage4.5 | None | ERR233347 | Sensitive | lineage3 | None | ERR8686579 | Sensitive | lineage3 | None | ERR4815639 | Sensitive | lineage3 | gb | SRR5818675 | Sensitive | lineage1.1.2 | None | ERR3287504 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR4035520 | RR-TB | lineage3 | za | ERR1633815 | Sensitive | lineage3 | za | SRR4035526 | RR-TB | lineage3 | za | SRR4035535 | RR-TB | lineage3 | za | ERR1200609 | Sensitive | lineage3 | et | ERR4811369 | MDR-TB | lineage4.5 | cn | SRR4035531 | RR-TB | lineage3 | za | SRR4035547 | RR-TB | lineage3 | za | SRR2101489 | Sensitive | lineage3 | None | ERR2446479 | Other | lineage3 | nl | SRR5818584 | Sensitive | lineage3 | dj | SRR4035517 | RR-TB | lineage3 | za | ERR3275210 | Other | lineage3 | nl | ERR2199967 | Sensitive | lineage1.1.1 | de | ERR1034783 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR8699810 | Sensitive | lineage3 | None | SRR4035518 | RR-TB | lineage3 | za | ERR190394 | Sensitive | lineage3 | mw | SRR5073778 | Sensitive | lineage1.1.1 | vn | ERR163961 | Other | lineage3 | mw | SRR4035515 | RR-TB | lineage3 | za | SRR4035519 | RR-TB | lineage3 | za | SRR4035506 | RR-TB | lineage3 | za | ERR4830530 | RR-TB | lineage3 | za | ERR1034935 | Sensitive | lineage3 | za |
|---|
