Rv3854c - p.Pro378Leu
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
2 HR-TB
191 MDR-TB
92 Pre-XDR-TB
5 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 169 |
| lineage2.2.1 | 99 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage2.2.1;lineage4.3.3 | 2 |
| lineage2.1 | 1 |
| lineage3.1.2 | 2 |
| lineage4.1.2.1;lineage4.3.3 | 2 |
| lineage4.8 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 4 |
| lineage2.2.1.1 | 1 |
| lineage1.2.2.2;lineage3 | 1 |
| lineage3 | 2 |
| lineage1.1.2;lineage2.2.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 290 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2510695 | MDR-TB | lineage4.3.3 | it | ERR2510734 | MDR-TB | lineage4.3.3 | it | ERR3639751 | XDR-TB | lineage2.2.1 | None | SRR13870422 | Pre-XDR-TB | lineage4.3.3 | None | ERR2510872 | MDR-TB | lineage4.3.3 | it | SRR6831888 | MDR-TB | lineage2.2.1 | None | SRR13232757 | MDR-TB | lineage2.2.1 | None | ERR11068604 | MDR-TB | lineage2.2.1 | None | ERR4797638 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2 | in | SRR14782739 | MDR-TB | lineage2.2.1 | None | SRR1169036 | MDR-TB | lineage2.2.1 | None | ERR8773608 | MDR-TB | lineage2.2.1 | None | ERR5865606 | MDR-TB | lineage2.2.1 | None | SRR22461632 | Pre-XDR-TB | lineage4.3.3 | None | ERR6865753 | MDR-TB | lineage4.3.3 | None | ERR4813144 | Pre-XDR-TB | lineage4.3.3 | None | SRR24256175 | MDR-TB | lineage2.2.1 | None | ERR12117957 | MDR-TB | lineage4.3.3 | None | ERR234605 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR4423614 | Pre-XDR-TB | lineage4.3.3 | None | ERR8773606 | MDR-TB | lineage2.2.1 | None | ERR2307514 | MDR-TB | lineage2.2.1 | None | ERR13284531 | MDR-TB | lineage2.2.1 | None | SRR29539737 | MDR-TB | lineage2.2.1 | None | ERR13260417 | MDR-TB | lineage4.3.3 | None | ERR13260670 | Pre-XDR-TB | lineage4.3.3 | None | ERR13290903 | MDR-TB | lineage2.1 | None | ERR4829369 | MDR-TB | lineage4.3.3 | None | ERR2451324 | MDR-TB | lineage4.3.3 | None | SRR29539802 | MDR-TB | lineage2.2.1 | None | SRR13870399 | Pre-XDR-TB | lineage4.3.3 | None | SRR18714832 | MDR-TB | lineage2.2.1 | None | ERR2307548 | MDR-TB | lineage2.2.1 | None | ERR4819966 | HR-TB | lineage3.1.2 | gb | SAMN02414952 | MDR-TB | lineage4.3.3 | se | SAMN02584653 | MDR-TB | lineage2.2.1 | md | SRR28393978 | MDR-TB | lineage4.1.2.1;lineage4.3.3 | None | SRR28714179 | MDR-TB | lineage2.2.1 | None | ERR3287839 | MDR-TB | lineage4.3.3 | pe | SRR28393694 | MDR-TB | lineage4.3.3 | None | ERR3287518 | MDR-TB | lineage4.3.3 | None | ERR3287526 | MDR-TB | lineage4.3.3 | None | ERR3287824 | MDR-TB | lineage4.3.3 | pe | SRR28393585 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287836 | MDR-TB | lineage4.3.3 | pe | SRR28393980 | MDR-TB | lineage4.3.3 | None | ERR3287849 | MDR-TB | lineage4.3.3 | pe | ERR3287860 | MDR-TB | lineage4.3.3 | pe | SRR28393815 | MDR-TB | lineage4.3.3 | None | ERR4813422 | Pre-XDR-TB | lineage4.3.3 | pe | ERR751504 | MDR-TB | lineage4.3.3 | pe | ERR751444 | MDR-TB | lineage4.3.3 | pe | ERR4822295 | MDR-TB | lineage2.2.1 | de | ERR4828832 | MDR-TB | lineage4.3.3 | None | ERR8665892 | MDR-TB | lineage2.2.1 | None | ERR4813060 | Pre-XDR-TB | lineage4.3.3 | None | ERR7911736 | Pre-XDR-TB | lineage2.2.1 | us | ERR4813026 | MDR-TB | lineage4.3.3 | None | ERR775365 | MDR-TB | lineage4.3.3 | pe | SRR13870423 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393636 | MDR-TB | lineage4.3.3 | None | SRR6807708 | Pre-XDR-TB | lineage2.2.1 | None | SRR6807747 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131233 | MDR-TB | lineage4.3.3 | None | ERR4813105 | Pre-XDR-TB | lineage4.3.3 | None | ERR12117907 | Pre-XDR-TB | lineage4.3.3 | None | ERR10877865 | MDR-TB | lineage2.2.1 | None | ERR2861337 | MDR-TB | lineage4.3.3 | None | ERR2516327 | MDR-TB | lineage2.2.1 | be | ERR4828133 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827951 | MDR-TB | lineage2.2.1 | None | SRR13870384 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287779 | MDR-TB | lineage4.3.3 | pe | ERR3287520 | MDR-TB | lineage4.3.3 | None | ERR3287834 | MDR-TB | lineage4.3.3 | pe | ERR3287582 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287506 | Pre-XDR-TB | lineage4.3.3 | None | ERR3287710 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287775 | MDR-TB | lineage4.3.3 | pe | ERR3287525 | MDR-TB | lineage4.3.3 | None | ERR2307595 | MDR-TB | lineage2.2.1 | None | SRR1166934 | MDR-TB | lineage4.3.3 | None | ERR11043528 | MDR-TB | lineage4.8 | None | SRR29539652 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394034 | MDR-TB | lineage4.3.3 | None | SRR3743494 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284157 | XDR-TB | lineage2.2.1 | None | ERR4813158 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.3 | None | ERR4813610 | MDR-TB | lineage4.3.3 | None | ERR11043890 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR7911363 | MDR-TB | lineage4.3.3 | None | ERR13292572 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911364 | MDR-TB | lineage4.3.3 | None | ERR2861339 | MDR-TB | lineage4.3.3 | None | SRR29539269 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276261 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR24256285 | MDR-TB | lineage2.2.1 | None | SRR6832746 | MDR-TB | lineage2.2.1 | None | ERR13260405 | MDR-TB | lineage4.3.3 | None | SRR29772392 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13284360 | MDR-TB | lineage2.2.1 | None | ERR10877863 | MDR-TB | lineage2.2.1 | None | ERR4423628 | MDR-TB | lineage4.3.3 | None | SRR29539682 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131047 | MDR-TB | lineage4.3.3 | None | ERR13260673 | Pre-XDR-TB | lineage4.3.3 | None | SRR18714909 | MDR-TB | lineage2.2.1 | None | ERR2451323 | MDR-TB | lineage4.3.3 | None | ERR4827460 | MDR-TB | lineage2.2.1 | None | ERR4178198 | MDR-TB | lineage4.3.3 | None | SRR29539852 | XDR-TB | lineage2.2.1 | None | ERR234629 | MDR-TB | lineage2.2.1 | ru | ERR4813097 | Pre-XDR-TB | lineage4.3.3 | None | SRR10397226 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798336 | Pre-XDR-TB | lineage1.2.2.2;lineage3 | in | ERR4829044 | MDR-TB | lineage4.3.3 | None | SRR3082114 | MDR-TB | lineage4.3.3 | None | ERR4799668 | Pre-XDR-TB | lineage3 | in | ERR11068902 | MDR-TB | lineage2.2.1 | None | SRR29772466 | Pre-XDR-TB | lineage1.1.2;lineage2.2.1.1 | None | ERR4822386 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4797854 | MDR-TB | lineage3.1.2 | in | SRR29772567 | MDR-TB | lineage2.2.1 | None | ERR5864641 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393493 | MDR-TB | lineage4.3.3 | None | SRR28394182 | MDR-TB | lineage4.3.3 | None | SRR1166187 | MDR-TB | lineage2.2.1 | None | ERR4813142 | Pre-XDR-TB | lineage4.3.3 | None | ERR4178160 | MDR-TB | lineage4.3.3 | None | ERR4813196 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813209 | Pre-XDR-TB | lineage4.3.3 | pe | SRR6256971 | Pre-XDR-TB | lineage2.2.1 | None | ERR3287614 | Pre-XDR-TB | lineage4.3.3 | pe | ERR3287823 | MDR-TB | lineage4.3.3 | pe | ERR3287833 | MDR-TB | lineage4.3.3 | pe | SRR28393696 | Pre-XDR-TB | lineage4.3.3 | None | SRR3085352 | MDR-TB | lineage4.3.3 | None | ERR3287817 | MDR-TB | lineage4.3.3 | pe | ERR3287831 | MDR-TB | lineage4.3.3 | pe | ERR3287508 | MDR-TB | lineage4.3.3 | pe | ERR4822605 | MDR-TB | lineage2.2.1 | de | ERR3287794 | MDR-TB | lineage4.3.3 | pe | SRR28393686 | MDR-TB | lineage4.3.3 | None | ERR3287882 | Pre-XDR-TB | lineage4.3.3 | pe | SRR28393604 | MDR-TB | lineage4.3.3 | None | SRR7829588 | MDR-TB | lineage4.3.3 | None | SRR28393363 | MDR-TB | lineage4.3.3 | None | SRR28393957 | Pre-XDR-TB | lineage4.3.3 | None | ERR4813083 | MDR-TB | lineage4.3.3 | pe | ERR7910879 | MDR-TB | lineage4.3.3 | pe | SRR6832442 | MDR-TB | lineage2.2.1 | None | ERR4812980 | MDR-TB | lineage4.3.3 | pe | ERR7911422 | Pre-XDR-TB | lineage2.2.1 | us | ERR751492 | MDR-TB | lineage4.3.3 | pe | ERR4829825 | MDR-TB | lineage4.3.3 | it | ERR7911039 | Pre-XDR-TB | lineage2.2.1 | md | ERR4829828 | MDR-TB | lineage4.3.3 | it | ERR4829829 | MDR-TB | lineage4.3.3 | None | ERR4812815 | Pre-XDR-TB | lineage4.3.3 | None | ERR751402 | MDR-TB | lineage4.3.3 | pe | ERR4829247 | MDR-TB | lineage4.3.3 | None | SRR28393565 | MDR-TB | lineage4.3.3 | None | ERR4025147 | MDR-TB | lineage4.3.3 | None | SRR5266547 | MDR-TB | lineage2.2.1 | ru | ERR2516705 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516649 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516690 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516429 | MDR-TB | lineage4.3.3 | pe | ERR2516595 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516544 | MDR-TB | lineage4.3.3 | pe | ERR2516608 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516646 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516614 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2516460 | MDR-TB | lineage4.3.3 | pe | ERR4813187 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | pe | ERR2510793 | MDR-TB | lineage4.3.3 | it | ERR2510874 | MDR-TB | lineage4.3.3 | it | SRR28393325 | MDR-TB | lineage4.3.3 | None | ERR13276193 | MDR-TB | lineage2.2.1 | None | ERR4828776 | MDR-TB | lineage4.3.3 | None | ERR11082858 | MDR-TB | lineage2.2.1 | None | ERR5864639 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085318 | MDR-TB | lineage4.3.3 | None | ERR4423627 | MDR-TB | lineage4.3.3 | None | ERR12117993 | Pre-XDR-TB | lineage4.3.3 | None | SRR18715075 | MDR-TB | lineage2.2.1 | None | SRR7131098 | MDR-TB | lineage4.3.3 | None | ERR2677433 | MDR-TB | lineage2.2.1 | de | ERR2677455 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | de | SRR28393348 | MDR-TB | lineage4.3.3 | None | SRR6797758 | MDR-TB | lineage2.2.1 | None | ERR12118052 | MDR-TB | lineage4.3.3 | None | SRR1162823 | MDR-TB | lineage4.3.3 | None | ERR4872295 | XDR-TB | lineage2.2.1 | None | SRR24256177 | MDR-TB | lineage2.2.1 | None | SRR28393783 | MDR-TB | lineage4.3.3 | None | SRR7829573 | MDR-TB | lineage4.3.3 | None | ERR2861340 | MDR-TB | lineage4.3.3 | None | ERR13260200 | Pre-XDR-TB | lineage4.3.3 | None | ERR2124102 | MDR-TB | lineage4.3.3 | None | ERR4827591 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035359 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR3287816 | MDR-TB | lineage4.3.3 | pe | ERR3287764 | MDR-TB | lineage4.3.3 | pe | ERR3287510 | MDR-TB | lineage4.3.3 | None | SRR23086727 | MDR-TB | lineage4.3.3 | None | SRR23086705 | MDR-TB | lineage4.3.3 | None | SRR23086706 | MDR-TB | lineage4.3.3 | None | ERR11798530 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044091 | MDR-TB | lineage2.2.1 | None | SRR3082128 | MDR-TB | lineage2.2.1 | None | SRR24256231 | MDR-TB | lineage2.2.1 | None | ERR2861338 | MDR-TB | lineage4.3.3 | None | ERR6865704 | MDR-TB | lineage4.3.3 | None | ERR6865403 | MDR-TB | lineage4.3.3 | None | ERR6879029 | MDR-TB | lineage4.3.3 | None | SRR29681252 | HR-TB | lineage2.2.1 | None | ERR5864638 | MDR-TB | lineage2.2.1 | None | ERR13260677 | Pre-XDR-TB | lineage4.3.3 | None | ERR2307542 | MDR-TB | lineage2.2.1 | None | ERR11081995 | XDR-TB | lineage2.2.1 | None | SRR24256105 | MDR-TB | lineage2.2.1 | None | ERR13276363 | MDR-TB | lineage2.2.1 | None | SRR29539552 | MDR-TB | lineage2.2.1 | None | ERR4813165 | Pre-XDR-TB | lineage4.3.3 | None | ERR13289477 | MDR-TB | lineage2.2.1 | None | SRR6650110 | MDR-TB | lineage2.2.1 | None | ERR5865867 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832798 | MDR-TB | lineage2.2.1 | None | SRR7131050 | MDR-TB | lineage4.3.3 | None | SRR3085320 | MDR-TB | lineage4.3.3 | None | SRR6256974 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261586 | MDR-TB | lineage4.3.3 | None | SRR28393769 | MDR-TB | lineage4.3.3 | None | SRR1166267 | MDR-TB | lineage2.2.1 | None | SRR7829586 | MDR-TB | lineage4.3.3 | None | ERR5864642 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169111 | MDR-TB | lineage2.2.1 | None | SRR24256154 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864640 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393648 | MDR-TB | lineage4.3.3 | None | ERR4813167 | Pre-XDR-TB | lineage4.3.3 | None | ERR5865868 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681439 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR14781981 | MDR-TB | lineage2.2.1 | None | SRR28394200 | Pre-XDR-TB | lineage4.3.3 | None | ERR3335774 | Pre-XDR-TB | lineage3.1.3 | pk | ERR13285134 | MDR-TB | lineage4.8 | None | ERR3287865 | MDR-TB | lineage4.3.3 | pe | SRR29539560 | MDR-TB | lineage2.2.1 | None | ERR5864637 | MDR-TB | lineage2.2.1 | None | ERR4797937 | Pre-XDR-TB | lineage3 | in | SRR6831710 | MDR-TB | lineage2.2.1 | None | ERR4812171 | MDR-TB | lineage4.3.3 | pe | ERR7911365 | MDR-TB | lineage4.3.3 | None | ERR6866137 | MDR-TB | lineage4.3.3 | None | SAMN02584608 | MDR-TB | lineage2.2.1 | md | ERR2451322 | MDR-TB | lineage4.3.3 | None | ERR4813101 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813166 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2510875 | MDR-TB | lineage4.3.3 | it | SRR28393384 | MDR-TB | lineage4.3.3 | None | ERR4822601 | MDR-TB | lineage2.2.1 | de | ERR4822604 | MDR-TB | lineage2.2.1 | de | ERR4829043 | MDR-TB | lineage4.3.3 | None | ERR751528 | MDR-TB | lineage4.3.3 | pe | ERR4813191 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4813197 | Pre-XDR-TB | lineage4.3.3 | pe | ERR7911740 | Pre-XDR-TB | lineage2.2.1 | us | ERR775360 | Pre-XDR-TB | lineage4.3.3 | pe | ERR12117943 | Pre-XDR-TB | lineage4.3.3 | None | ERR751448 | Pre-XDR-TB | lineage4.3.3 | pe | SRR3086403 | MDR-TB | lineage4.3.3 | None | SRR28393823 | MDR-TB | lineage4.3.3 | None | SRR29681356 | MDR-TB | lineage2.2.1 | None | ERR1034712 | MDR-TB | lineage4.3.3 | pe | ERR1034734 | MDR-TB | lineage4.3.3 | pe | SRR28393677 | MDR-TB | lineage4.3.3 | None | SRR6831749 | MDR-TB | lineage2.2.1 | None | SRR13870407 | Pre-XDR-TB | lineage4.3.3 | None | SRR24256353 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762331 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393939 | MDR-TB | lineage4.3.3 | None | ERR13275900 | MDR-TB | lineage2.2.1 | None | SRR13870410 | Pre-XDR-TB | lineage4.3.3 | None | SRR7655783 | Pre-XDR-TB | lineage4.1.2 | None | SRR28394229 | MDR-TB | lineage4.3.3 | None | ERR5865607 | MDR-TB | lineage2.2.1 | None | ERR4813141 | Pre-XDR-TB | lineage4.3.3 | None | SRR13870380 | Pre-XDR-TB | lineage4.3.3 | None |
|---|
