Rv3862c - c.-79T>C


Drug resistance types
39 Sensitive 5 RR-TB 49 HR-TB 212 MDR-TB 58 Pre-XDR-TB 1 XDR-TB 3 Other
lineage Counts
lineage Count
lineage4.3.4.2 264
lineage1.2.2.1 16
lineage2.2.1 24
lineage4.8 14
lineage4.1.1.1;lineage4.3.4.2 3
lineage4.3.3 20
lineage1.2.2.1;lineage4.4.1.1 2
lineage4.5 3
lineage2.2.1.1 2
lineage3 2
lineage4.3.1 2
lineage4.4.2 1
lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 1
lineage4.9 2
lineage4.3.4.1 6
lineage4.3.4.2;lineage4.8 1
lineage4.3.3;lineage4.3.4.2 1
lineage4.1 1
lineage4.3.2 2
spoligotype Counts
spoligotype Count
None 367
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR9285923 Sensitive lineage4.3.4.2 None
SRR16370489 MDR-TB lineage4.3.4.2 None
ERR4813490 HR-TB lineage4.3.4.2 None
ERR11489040 MDR-TB lineage1.2.2.1 None
ERR11488840 MDR-TB lineage1.2.2.1 None
ERR551516 RR-TB lineage2.2.1 None
ERR13260115 MDR-TB lineage4.3.4.2 None
ERR551515 RR-TB lineage2.2.1 None
ERR4024571 MDR-TB lineage4.3.4.2 None
ERR6866134 MDR-TB lineage4.3.4.2 None
SRR1166137 Pre-XDR-TB lineage4.8 ro
ERR4813718 MDR-TB lineage4.3.4.2 None
ERR9029875 MDR-TB lineage4.1.1.1;lineage4.3.4.2 None
ERR2513611 Sensitive lineage4.3.4.2 None
ERR13292092 Sensitive lineage4.3.4.2 None
ERR4813596 MDR-TB lineage4.3.4.2 None
ERR13260044 MDR-TB lineage4.3.4.2 None
ERR13284228 MDR-TB lineage4.3.3 None
ERR6865544 MDR-TB lineage4.3.4.2 None
ERR7911358 HR-TB lineage4.3.3 None
ERR6865735 MDR-TB lineage4.3.4.2 None
ERR4024744 MDR-TB lineage4.3.4.2 None
ERR12117975 MDR-TB lineage4.3.4.2 None
SRR28393345 MDR-TB lineage4.3.4.2 None
ERR13260197 MDR-TB lineage4.3.4.2 None
SRR28393936 MDR-TB lineage4.3.4.2 None
ERR11465711 Other lineage1.2.2.1;lineage4.4.1.1 None
ERR13260317 MDR-TB lineage4.3.4.2 None
ERR13260260 HR-TB lineage4.3.4.2 None
ERR13260258 HR-TB lineage4.3.4.2 None
ERR3287566 HR-TB lineage4.3.4.2 None
ERR2510877 MDR-TB lineage4.3.4.2 it
ERR13260254 HR-TB lineage4.3.4.2 None
SRR21279460 MDR-TB lineage4.5 None
SRR21722119 Sensitive lineage2.2.1.1 None
ERR6866070 MDR-TB lineage4.3.4.2 None
SRR16370511 MDR-TB lineage4.3.4.2 None
SRR7070669 Sensitive lineage4.3.4.2 None
SRR29273756 MDR-TB lineage4.8 None
ERR2514394 Sensitive lineage4.3.4.2 None
ERR688016 Pre-XDR-TB lineage3 None
SRR25207053 MDR-TB lineage2.2.1 None
ERR551514 RR-TB lineage2.2.1 None
ERR3287583 Pre-XDR-TB lineage4.3.4.2 None
ERR4813666 MDR-TB lineage4.3.4.2 None
ERR4025027 MDR-TB lineage4.3.4.2 None
ERR6865796 MDR-TB lineage4.3.4.2 None
ERR718264 Sensitive lineage4.5 th
SRR28393492 MDR-TB lineage4.3.4.2 None
SRR28393592 MDR-TB lineage4.3.4.2 None
SRR28393276 Pre-XDR-TB lineage4.3.4.2 None
SRR28393632 Pre-XDR-TB lineage4.3.4.2 None
SRR28393359 MDR-TB lineage4.3.4.2 None
ERR779870 MDR-TB lineage4.3.4.2 pe
ERR7910843 MDR-TB lineage4.3.4.2 pe
SRR28393661 MDR-TB lineage4.3.4.2 None
SRR28339300 Pre-XDR-TB lineage2.2.1 None
SRR28393358 MDR-TB lineage4.3.4.2 None
ERR7910993 MDR-TB lineage4.3.4.2 pe
ERR7911002 MDR-TB lineage4.3.4.2 pe
ERR7911342 MDR-TB lineage4.3.4.2 pe
ERR3014602 Pre-XDR-TB lineage4.3.1 None
ERR3273130 Pre-XDR-TB lineage4.4.2 None
SRR28393663 MDR-TB lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 None
ERR751426 MDR-TB lineage4.3.4.2 pe
ERR4811800 HR-TB lineage4.3.4.2 None
ERR775387 MDR-TB lineage4.3.4.2 pe
ERR751439 MDR-TB lineage4.3.4.2 pe
ERR751513 HR-TB lineage4.3.4.2 pe
ERR845937 MDR-TB lineage4.3.4.2 pe
ERR779854 MDR-TB lineage4.3.4.2 pe
ERR775350 MDR-TB lineage4.3.4.2 pe
ERR751565 MDR-TB lineage4.3.4.2 pe
ERR751597 MDR-TB lineage4.3.4.2 pe
ERR779865 MDR-TB lineage4.3.4.2 pe
ERR751563 Pre-XDR-TB lineage4.3.4.2 pe
ERR751496 MDR-TB lineage4.3.4.2 pe
ERR779880 MDR-TB lineage4.3.4.2 pe
ERR751425 HR-TB lineage4.3.4.2 pe
ERR3287570 MDR-TB lineage4.3.4.2 None
SRR28393785 MDR-TB lineage4.3.4.2 None
ERR1034784 Pre-XDR-TB lineage4.3.4.2 pe
ERR4811777 MDR-TB lineage4.3.4.2 pe
SRR18337390 Sensitive lineage4.8 None
SRR5486886 Pre-XDR-TB lineage4.8 None
SAMEA2533996 RR-TB lineage2.2.1 uz
ERR2516424 Pre-XDR-TB lineage4.3.4.2 pe
ERR2516572 Pre-XDR-TB lineage4.3.4.2 pe
ERR2516412 Pre-XDR-TB lineage4.3.4.2 pe
ERR2516480 Pre-XDR-TB lineage4.3.4.2 pe
ERR2516463 Pre-XDR-TB lineage4.3.4.2 pe
ERR2516478 Pre-XDR-TB lineage4.3.4.2 pe
ERR2516696 Pre-XDR-TB lineage4.3.4.2 pe
ERR4812735 HR-TB lineage4.3.4.2 pe
ERR2510200 HR-TB lineage4.3.4.2 pe
ERR2510140 MDR-TB lineage4.3.4.2 pe
ERR2510235 MDR-TB lineage4.3.4.2 pe
ERR2510132 MDR-TB lineage4.3.4.2 pe
ERR2510139 HR-TB lineage4.3.4.2 pe
ERR2510217 MDR-TB lineage4.3.4.2 pe
ERR2510202 MDR-TB lineage4.3.4.2 pe
ERR2510196 MDR-TB lineage4.3.4.2 pe
ERR2510224 MDR-TB lineage4.3.4.2 pe
ERR2510170 MDR-TB lineage4.3.4.2 pe
ERR4813349 MDR-TB lineage4.3.4.2 pe
ERR4813358 MDR-TB lineage4.3.4.2 pe
ERR4813386 MDR-TB lineage4.3.4.2 pe
ERR4813417 MDR-TB lineage4.3.4.2 pe
ERR4813449 MDR-TB lineage4.3.4.2 pe
ERR4813469 MDR-TB lineage4.3.4.2 pe
ERR4812896 MDR-TB lineage4.3.4.2 pe
ERR4813056 HR-TB lineage4.3.4.2 pe
ERR4813156 Pre-XDR-TB lineage4.3.4.2 pe
ERR4813195 Pre-XDR-TB lineage4.3.4.2 pe
ERR4812356 MDR-TB lineage4.3.4.2 pe
ERR4813281 HR-TB lineage4.3.4.2 pe
ERR4812752 MDR-TB lineage4.3.4.2 pe
ERR3287752 MDR-TB lineage4.3.4.2 pe
ERR3287768 MDR-TB lineage4.3.4.2 pe
ERR3287767 MDR-TB lineage4.3.4.2 pe
ERR3287770 MDR-TB lineage4.3.4.2 pe
ERR3287609 HR-TB lineage4.3.4.2 pe
ERR3287616 HR-TB lineage4.3.4.2 pe
ERR3287615 MDR-TB lineage4.3.4.2 pe
ERR3287619 MDR-TB lineage4.3.4.2 pe
ERR3287659 HR-TB lineage4.3.4.2 pe
ERR3287666 MDR-TB lineage4.3.4.2 pe
ERR3287688 MDR-TB lineage4.3.4.2 pe
ERR3287454 MDR-TB lineage4.3.4.2 pe
ERR3287460 HR-TB lineage4.3.4.2 pe
ERR3287465 MDR-TB lineage4.3.4.2 pe
ERR3287472 MDR-TB lineage4.3.4.2 pe
ERR3287478 HR-TB lineage4.3.4.2 pe
ERR3287483 MDR-TB lineage4.3.4.2 pe
ERR3287490 MDR-TB lineage4.3.4.2 pe
ERR3287492 HR-TB lineage4.3.4.2 pe
ERR3287497 Pre-XDR-TB lineage4.3.4.2 pe
ERR3287394 Pre-XDR-TB lineage4.3.4.2 pe
ERR3287835 MDR-TB lineage4.3.4.2 pe
ERR3287838 Pre-XDR-TB lineage4.3.4.2 pe
ERR3287840 MDR-TB lineage4.3.4.2 pe
ERR3287598 HR-TB lineage4.3.4.2 pe
ERR2184370 MDR-TB lineage4.3.4.2 pe
ERR2510679 MDR-TB lineage4.3.4.2 it
ERR4829671 MDR-TB lineage4.3.1 it
ERR4829756 MDR-TB lineage4.3.4.2 it
SRR6280213 Pre-XDR-TB lineage2.2.1 cn
SRR6280156 Pre-XDR-TB lineage2.2.1 cn
SRR6280158 Pre-XDR-TB lineage2.2.1 cn
SRR28394218 Pre-XDR-TB lineage4.3.4.2 None
SRR28393639 MDR-TB lineage4.3.4.2 None
SRR28393641 MDR-TB lineage4.3.4.2 None
ERR1034758 HR-TB lineage4.3.4.2 pe
SRR10808652 MDR-TB lineage4.3.4.2 None
SRR29273736 XDR-TB lineage4.8 None
ERR13260154 MDR-TB lineage4.3.4.2 None
ERR212110 Sensitive lineage1.2.2.1 mw
SRR29081599 Pre-XDR-TB lineage4.3.4.2 None
ERR12117896 MDR-TB lineage4.3.4.2 None
SRR28393790 MDR-TB lineage4.3.4.2 None
SRR3732590 MDR-TB lineage4.3.4.2 pe
ERR4024559 HR-TB lineage4.3.4.2 None
ERR4024763 MDR-TB lineage4.3.4.2 None
ERR6866515 MDR-TB lineage4.3.4.2 None
ERR12117900 Pre-XDR-TB lineage4.3.4.2 None
ERR3287661 MDR-TB lineage4.3.4.2 None
SRR6785526 Sensitive lineage4.3.4.2 None
ERR4811335 Pre-XDR-TB lineage2.2.1 cn
SRR10040395 MDR-TB lineage2.2.1 None
ERR4025134 MDR-TB lineage4.3.4.2 None
ERR13260277 MDR-TB lineage4.3.4.2 None
ERR9117712 Sensitive lineage4.3.4.2 None
SRR19276638 Pre-XDR-TB lineage4.3.4.2 None
ERR4813535 MDR-TB lineage4.3.4.2 pe
ERR6865980 MDR-TB lineage4.3.4.2 None
ERR6866333 MDR-TB lineage4.3.4.2 None
ERR7911359 HR-TB lineage4.3.3 None
ERR6865538 HR-TB lineage4.3.4.2 None
SRR28393308 MDR-TB lineage4.3.4.2 None
ERR7910844 MDR-TB lineage4.3.4.2 None
SRR28394068 MDR-TB lineage4.3.4.2 None
ERR4276866 Pre-XDR-TB lineage2.2.1 None
SRR21677869 Sensitive lineage4.9 None
ERR4822284 Pre-XDR-TB lineage2.2.1 None
ERR11050434 HR-TB lineage4.3.3 None
SRR28393581 MDR-TB lineage4.3.4.2 None
SRR10869049 Sensitive lineage1.2.2.1 None
SRR10854751 MDR-TB lineage4.3.4.2 None
ERR3287567 MDR-TB lineage4.3.4.2 None
ERR6866863 MDR-TB lineage4.3.4.2 None
ERR2184620 MDR-TB lineage4.3.4.2 None
SRR13870400 Pre-XDR-TB lineage4.3.4.2 None
SRR22528586 MDR-TB lineage4.3.3 None
ERR13260242 MDR-TB lineage4.3.4.2 None
SRR19303796 Other lineage4.3.3 None
SRR10525335 MDR-TB lineage4.8 None
ERR4812836 MDR-TB lineage4.3.4.2 None
SAMEA5569854 MDR-TB lineage4.3.4.2 None
ERR3287502 MDR-TB lineage4.3.4.2 None
ERR13267465 MDR-TB lineage4.3.4.2 None
SRR21710727 Sensitive lineage4.3.4.2 None
ERR11050998 HR-TB lineage4.3.3 None
ERR13261911 MDR-TB lineage4.3.4.2 None
SRR7592387 Pre-XDR-TB lineage4.8 None
ERR13284914 MDR-TB lineage4.3.4.2 None
ERR4812064 MDR-TB lineage4.3.4.2 None
SRR29081601 MDR-TB lineage4.3.4.2 None
ERR13261631 HR-TB lineage4.3.4.2 None
ERR4024783 HR-TB lineage4.3.4.2 None
ERR2513231 Sensitive lineage4.3.4.2 None
ERR11489039 MDR-TB lineage1.2.2.1 None
ERR13284842 MDR-TB lineage4.3.4.2 None
ERR9029857 MDR-TB lineage4.3.4.2 None
SRR29231836 MDR-TB lineage4.3.4.1 None
ERR12117986 MDR-TB lineage4.3.4.2 None
ERR12118022 MDR-TB lineage4.3.4.2 None
ERR13260585 HR-TB lineage4.3.4.2 None
ERR13261641 HR-TB lineage4.3.4.2 None
ERR13261948 MDR-TB lineage4.3.4.2 None
SRR29056063 Sensitive lineage1.2.2.1 None
ERR3287501 MDR-TB lineage4.1.1.1;lineage4.3.4.2 None
ERR13260278 MDR-TB lineage4.3.4.2 None
ERR11488913 MDR-TB lineage1.2.2.1 None
ERR12117931 MDR-TB lineage4.3.4.2 None
ERR2516508 Pre-XDR-TB lineage4.3.4.2 None
ERR11050337 HR-TB lineage4.3.3 None
ERR13290740 MDR-TB lineage4.5 None
ERR6865416 MDR-TB lineage4.3.4.2 None
ERR3287549 HR-TB lineage4.3.4.2 None
ERR6879040 Pre-XDR-TB lineage4.3.4.2 None
ERR13291664 Sensitive lineage2.2.1.1 None
ERR13261658 HR-TB lineage4.3.4.2 None
ERR13261567 MDR-TB lineage4.3.4.2 None
SRR22873595 MDR-TB lineage2.2.1 None
SRR29231799 MDR-TB lineage4.3.3 None
SRR28393810 Pre-XDR-TB lineage4.3.4.2 None
ERR13260683 MDR-TB lineage4.3.4.2 None
SRR29273759 MDR-TB lineage4.8 None
ERR4813057 MDR-TB lineage4.3.4.2 None
ERR13267435 MDR-TB lineage4.3.4.2 None
ERR13260680 MDR-TB lineage4.3.4.2 None
ERR4813011 Pre-XDR-TB lineage4.3.4.2 None
ERR11488908 MDR-TB lineage1.2.2.1 None
ERR4813135 HR-TB lineage4.3.4.2 None
ERR3287687 MDR-TB lineage4.3.4.2 None
ERR4813630 Pre-XDR-TB lineage4.3.4.2 None
ERR3287572 MDR-TB lineage4.3.4.2 None
ERR13261692 HR-TB lineage4.3.4.2;lineage4.8 None
ERR3287573 MDR-TB lineage4.3.4.2 None
ERR14708082 Pre-XDR-TB lineage4.9 None
ERR11252611 Sensitive lineage1.2.2.1 None
SRR9738489 MDR-TB lineage4.8 None
ERR12117964 MDR-TB lineage4.3.4.2 None
SRR28393466 MDR-TB lineage4.3.4.2 None
SRR28393326 Pre-XDR-TB lineage4.3.4.2 None
SRR28393664 MDR-TB lineage4.3.4.2 None
SRR28339299 Pre-XDR-TB lineage2.2.1 None
ERR751530 MDR-TB lineage4.3.4.2 pe
ERR751570 MDR-TB lineage4.3.4.2 pe
ERR751560 Pre-XDR-TB lineage4.3.4.2 pe
ERR751549 MDR-TB lineage4.3.4.2 pe
ERR751559 MDR-TB lineage4.3.4.2 pe
ERR775342 MDR-TB lineage4.3.4.2 pe
ERR751482 MDR-TB lineage4.3.4.2 pe
ERR751427 MDR-TB lineage4.3.4.2 pe
ERR751574 MDR-TB lineage4.3.4.2 pe
ERR779869 HR-TB lineage4.3.4.2 pe
SRR28394262 Pre-XDR-TB lineage4.3.4.2 None
SRR28393273 Pre-XDR-TB lineage4.3.4.2 None
SRR28646104 MDR-TB lineage4.8 None
ERR7910871 MDR-TB lineage4.3.4.2 pe
SRR22461607 MDR-TB lineage4.3.4.2 None
ERR1034584 Pre-XDR-TB lineage3 pk
ERR7911372 MDR-TB lineage4.3.4.2 pe
SRR2024952 Pre-XDR-TB lineage2.2.1 cn
SRR2024951 Pre-XDR-TB lineage2.2.1 cn
ERR2707180 MDR-TB lineage4.3.4.1 cd
ERR2707001 MDR-TB lineage4.3.3 cd
ERR2707176 MDR-TB lineage4.3.4.1 cd
ERR751608 MDR-TB lineage4.3.4.2 pe
ERR751582 MDR-TB lineage4.3.4.2 pe
ERR751547 MDR-TB lineage4.3.4.2 pe
ERR775351 MDR-TB lineage4.3.4.2 pe
ERR751463 MDR-TB lineage4.3.4.2 pe
ERR751477 HR-TB lineage4.3.4.2 pe
ERR779921 MDR-TB lineage4.3.4.2 pe
ERR751536 HR-TB lineage4.3.4.2 pe
ERR751368 HR-TB lineage4.3.4.2 pe
ERR751572 MDR-TB lineage4.3.4.2 pe
ERR775353 MDR-TB lineage4.3.4.2 pe
ERR751434 MDR-TB lineage4.3.4.2 pe
ERR779885 MDR-TB lineage4.3.4.2 pe
ERR751396 MDR-TB lineage4.3.3;lineage4.3.4.2 pe
ERR11465714 Other lineage1.2.2.1;lineage4.4.1.1 None
SRR22461627 HR-TB lineage4.3.4.2 None
ERR3287580 Pre-XDR-TB lineage4.3.4.2 None
SRR28393786 MDR-TB lineage4.3.4.2 None
ERR400411 Sensitive lineage1.2.2.1 gb
ERR1193744 Sensitive lineage4.3.3 za
ERR4818231 Sensitive lineage1.2.2.1 gb
ERR4820218 Sensitive lineage4.3.4.1 gb
ERR2514175 Sensitive lineage1.2.2.1 gb
ERR2513264 Sensitive lineage4.3.4.2 gb
ERR133846 Sensitive lineage4.3.3 ru
ERR4810795 Pre-XDR-TB lineage2.2.1 None
ERR8975046 MDR-TB lineage1.2.2.1 None
ERR12117916 MDR-TB lineage4.3.4.2 None
SRR23691398 Sensitive lineage2.2.1 None
SAMEA5569880 MDR-TB lineage4.3.4.2 None
ERR11243480 Sensitive lineage4.8 None
SRR21689444 Sensitive lineage4.1 None
SRR28393568 MDR-TB lineage4.3.4.2 None
ERR6865384 MDR-TB lineage4.3.4.2 None
SRR13870408 Pre-XDR-TB lineage4.3.4.2 None
ERR6865990 HR-TB lineage4.3.4.2 None
ERR9029876 HR-TB lineage4.3.4.2 None
ERR4178182 MDR-TB lineage4.3.4.2 None
ERR11082757 MDR-TB lineage4.3.4.2 None
SRR19276643 Pre-XDR-TB lineage4.3.4.2 None
ERR11489059 MDR-TB lineage1.2.2.1 None
SRR28393537 MDR-TB lineage4.3.4.2 None
SRR28393930 MDR-TB lineage4.3.4.2 None
SRR10808884 MDR-TB lineage4.3.4.2 None
ERR4813139 Pre-XDR-TB lineage4.3.4.2 None
ERR6865475 MDR-TB lineage4.3.4.2 None
ERR4811666 MDR-TB lineage4.3.4.2 pe
ERR4178299 MDR-TB lineage4.3.4.2 None
ERR4813554 MDR-TB lineage4.3.4.2 None
ERR4811965 HR-TB lineage4.3.4.2 pe
ERR7910845 MDR-TB lineage4.3.4.2 None
SRR6046873 Sensitive lineage1.2.2.1 None
SRR13870391 Pre-XDR-TB lineage4.3.4.2 None
ERR13283995 Pre-XDR-TB lineage2.2.1 None
SRR13591449 Sensitive lineage4.8 None
ERR1034679 MDR-TB lineage4.3.3 co
ERR9029859 MDR-TB lineage4.3.4.2 None
SRR7070370 Sensitive lineage1.2.2.1 None
SAMEA5569694 MDR-TB lineage4.1.1.1;lineage4.3.4.2 None
ERR11083060 MDR-TB lineage4.3.2 None
SRR23938629 MDR-TB lineage4.3.3 None
ERR494998 Sensitive lineage4.3.3 None
SAMEA5569759 HR-TB lineage4.3.4.2 None
SRR28394093 MDR-TB lineage4.3.4.2 None
ERR4024921 MDR-TB lineage4.3.4.2 None
SRR28393495 MDR-TB lineage4.3.4.2 None
ERR4813217 Pre-XDR-TB lineage4.3.4.2 None
SRR18337391 Sensitive lineage4.8 None
ERR551515_ERR551516_ERR551514 RR-TB lineage2.2.1 None
ERR13260342 HR-TB lineage4.3.4.1 None
ERR1633785 Sensitive lineage4.3.3 za
SRR18337392 Sensitive lineage4.8 None
SRR5894882 MDR-TB lineage2.2.1 None
SRR28393623 Pre-XDR-TB lineage4.3.4.2 None
ERR11081128 MDR-TB lineage4.3.3 None
ERR4812875 MDR-TB lineage4.3.4.2 None
ERR279467 Sensitive lineage4.3.3 None
ERR13284839 MDR-TB lineage4.3.2 None
DRR473798 Sensitive lineage2.2.1 None
ERR3287462 HR-TB lineage4.3.4.2 None
SRR7069415 Sensitive lineage4.3.4.2 None
SRR29231673 MDR-TB lineage4.3.4.1 None
ERR13260633 HR-TB lineage4.3.4.2 None
ERR3148055 MDR-TB lineage4.3.4.2 None
SRR21576538 MDR-TB lineage2.2.1 None
SRR7069351 Sensitive lineage4.3.4.2 None
ERR7911360 HR-TB lineage4.3.3 None
SRR24710138 MDR-TB lineage4.3.3 None