Rv3862c - c.-79T>C
Drug resistance types
34 Sensitive
5 RR-TB
38 HR-TB
184 MDR-TB
53 Pre-XDR-TB
0 XDR-TB
5 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2 | 231 |
| lineage4.3.3 | 18 |
| lineage3 | 2 |
| lineage4.8 | 11 |
| lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 | 1 |
| lineage2.2.1 | 23 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage1.2.2.1 | 15 |
| lineage4.5 | 2 |
| lineage4.3.1 | 2 |
| lineage4.3.2 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4.1.1.1;lineage4.3.4.2 | 3 |
| lineage4.9 | 1 |
| lineage4.1 | 1 |
| lineage4.3.3;lineage4.3.4.2 | 1 |
| lineage4.4.2 | 1 |
| lineage2.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 319 |
Geographic prevalence
Country level data for this variant is available for 135 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR751426 | MDR-TB | lineage4.3.4.2 | pe | ERR133846 | Sensitive | lineage4.3.3 | ru | ERR2514394 | Sensitive | lineage4.3.4.2 | None | ERR1193744 | Sensitive | lineage4.3.3 | za | ERR688016 | Pre-XDR-TB | lineage3 | None | ERR751427 | MDR-TB | lineage4.3.4.2 | pe | ERR751570 | MDR-TB | lineage4.3.4.2 | pe | SRR9738489 | MDR-TB | lineage4.8 | None | SRR28393568 | MDR-TB | lineage4.3.4.2 | None | SRR28393492 | MDR-TB | lineage4.3.4.2 | None | SRR28393641 | MDR-TB | lineage4.3.4.2 | None | SRR28393592 | MDR-TB | lineage4.3.4.2 | None | SRR28393276 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28393930 | MDR-TB | lineage4.3.4.2 | None | SRR28393632 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR22461627 | HR-TB | lineage4.3.4.2 | None | SRR28393466 | MDR-TB | lineage4.3.4.2 | None | SRR28393495 | MDR-TB | lineage4.3.4.2 | None | SRR28393326 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28393664 | MDR-TB | lineage4.3.4.2 | None | SRR28393663 | MDR-TB | lineage4.1.1;lineage4.1.2.1;lineage4.3.4.2 | None | ERR751608 | MDR-TB | lineage4.3.4.2 | pe | ERR6866515 | MDR-TB | lineage4.3.4.2 | None | ERR775353 | MDR-TB | lineage4.3.4.2 | pe | SAMEA2533996 | RR-TB | lineage2.2.1 | uz | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR12117900 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR3287688 | MDR-TB | lineage4.3.4.2 | pe | ERR7910845 | MDR-TB | lineage4.3.4.2 | None | SRR5486886 | Pre-XDR-TB | lineage4.8 | None | ERR4811666 | MDR-TB | lineage4.3.4.2 | pe | ERR2510224 | MDR-TB | lineage4.3.4.2 | pe | ERR751513 | HR-TB | lineage4.3.4.2 | pe | ERR3287767 | MDR-TB | lineage4.3.4.2 | pe | SAMEA5569759 | HR-TB | lineage4.3.4.2 | None | SRR13870408 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR11489059 | MDR-TB | lineage1.2.2.1 | None | ERR11243480 | Sensitive | lineage4.8 | None | ERR2510140 | MDR-TB | lineage4.3.4.2 | pe | ERR751560 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR3732590 | MDR-TB | lineage4.3.4.2 | pe | SAMEA5569880 | MDR-TB | lineage4.3.4.2 | None | SRR10869049 | Sensitive | lineage1.2.2.1 | None | ERR775342 | MDR-TB | lineage4.3.4.2 | pe | ERR4024921 | MDR-TB | lineage4.3.4.2 | None | SRR22528586 | MDR-TB | lineage4.3.3 | None | ERR2510217 | MDR-TB | lineage4.3.4.2 | pe | SRR10525335 | MDR-TB | lineage4.8 | None | ERR718264 | Sensitive | lineage4.5 | th | ERR6865544 | MDR-TB | lineage4.3.4.2 | None | SRR10040395 | MDR-TB | lineage2.2.1 | None | ERR775351 | MDR-TB | lineage4.3.4.2 | pe | SRR18337392 | Sensitive | lineage4.8 | None | ERR3287609 | HR-TB | lineage4.3.4.2 | pe | ERR3287502 | MDR-TB | lineage4.3.4.2 | None | ERR2516572 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR16370489 | MDR-TB | lineage4.3.4.2 | None | ERR4818231 | Sensitive | lineage1.2.2.1 | gb | ERR4813281 | HR-TB | lineage4.3.4.2 | pe | ERR3148055 | MDR-TB | lineage4.3.4.2 | None | ERR4812875 | MDR-TB | lineage4.3.4.2 | None | ERR2516478 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4024744 | MDR-TB | lineage4.3.4.2 | None | ERR7910843 | MDR-TB | lineage4.3.4.2 | pe | ERR3287838 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR11489039 | MDR-TB | lineage1.2.2.1 | None | ERR751559 | MDR-TB | lineage4.3.4.2 | pe | SRR24710138 | MDR-TB | lineage4.3.3 | None | ERR3287454 | MDR-TB | lineage4.3.4.2 | pe | ERR551516 | RR-TB | lineage2.2.1 | None | ERR3287483 | MDR-TB | lineage4.3.4.2 | pe | ERR2510235 | MDR-TB | lineage4.3.4.2 | pe | ERR751547 | MDR-TB | lineage4.3.4.2 | pe | ERR3287619 | MDR-TB | lineage4.3.4.2 | pe | ERR12117931 | MDR-TB | lineage4.3.4.2 | None | ERR2516508 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813718 | MDR-TB | lineage4.3.4.2 | None | ERR779854 | MDR-TB | lineage4.3.4.2 | pe | ERR2516424 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR3287616 | HR-TB | lineage4.3.4.2 | pe | ERR11050434 | HR-TB | lineage4.3.3 | None | ERR6866070 | MDR-TB | lineage4.3.4.2 | None | ERR4812752 | MDR-TB | lineage4.3.4.2 | pe | SRR2024952 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4813139 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR751530 | MDR-TB | lineage4.3.4.2 | pe | ERR2510170 | MDR-TB | lineage4.3.4.2 | pe | ERR3287465 | MDR-TB | lineage4.3.4.2 | pe | ERR4025027 | MDR-TB | lineage4.3.4.2 | None | ERR775350 | MDR-TB | lineage4.3.4.2 | pe | ERR3287566 | HR-TB | lineage4.3.4.2 | None | ERR779885 | MDR-TB | lineage4.3.4.2 | pe | ERR751536 | HR-TB | lineage4.3.4.2 | pe | SRR10808884 | MDR-TB | lineage4.3.4.2 | None | ERR3287570 | MDR-TB | lineage4.3.4.2 | None | SRR13591449 | Sensitive | lineage4.8 | None | ERR3287573 | MDR-TB | lineage4.3.4.2 | None | ERR2510202 | MDR-TB | lineage4.3.4.2 | pe | ERR1034758 | HR-TB | lineage4.3.4.2 | pe | SRR28393623 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28394093 | MDR-TB | lineage4.3.4.2 | None | SRR28393785 | MDR-TB | lineage4.3.4.2 | None | SRR28393639 | MDR-TB | lineage4.3.4.2 | None | SRR28393345 | MDR-TB | lineage4.3.4.2 | None | SRR28393581 | MDR-TB | lineage4.3.4.2 | None | SRR28339299 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393936 | MDR-TB | lineage4.3.4.2 | None | SRR28394262 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28393273 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28393661 | MDR-TB | lineage4.3.4.2 | None | SRR28646104 | MDR-TB | lineage4.8 | None | SRR28339300 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034584 | Pre-XDR-TB | lineage3 | pk | ERR751482 | MDR-TB | lineage4.3.4.2 | pe | ERR751565 | MDR-TB | lineage4.3.4.2 | pe | ERR3287490 | MDR-TB | lineage4.3.4.2 | pe | ERR3014602 | Pre-XDR-TB | lineage4.3.1 | None | ERR6865416 | MDR-TB | lineage4.3.4.2 | None | ERR7911358 | HR-TB | lineage4.3.3 | None | ERR4178182 | MDR-TB | lineage4.3.4.2 | None | ERR779869 | HR-TB | lineage4.3.4.2 | pe | ERR3287661 | MDR-TB | lineage4.3.4.2 | None | SRR6280213 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1166137 | Pre-XDR-TB | lineage4.8 | ro | ERR4813666 | MDR-TB | lineage4.3.4.2 | None | ERR4813535 | MDR-TB | lineage4.3.4.2 | pe | ERR4813469 | MDR-TB | lineage4.3.4.2 | pe | ERR4813056 | HR-TB | lineage4.3.4.2 | pe | SRR6046873 | Sensitive | lineage1.2.2.1 | None | SRR19276638 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR7910993 | MDR-TB | lineage4.3.4.2 | pe | SRR10808652 | MDR-TB | lineage4.3.4.2 | None | ERR1034784 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR751549 | MDR-TB | lineage4.3.4.2 | pe | ERR12117916 | MDR-TB | lineage4.3.4.2 | None | ERR9029859 | MDR-TB | lineage4.3.4.2 | None | ERR7910871 | MDR-TB | lineage4.3.4.2 | pe | ERR751582 | MDR-TB | lineage4.3.4.2 | pe | ERR494998 | Sensitive | lineage4.3.3 | None | ERR3287460 | HR-TB | lineage4.3.4.2 | pe | ERR4276866 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813386 | MDR-TB | lineage4.3.4.2 | pe | SRR7069351 | Sensitive | lineage4.3.4.2 | None | ERR551515_ERR551516_ERR551514 | RR-TB | lineage2.2.1 | None | ERR6865538 | HR-TB | lineage4.3.4.2 | None | ERR2184620 | MDR-TB | lineage4.3.4.2 | None | SRR6785526 | Sensitive | lineage4.3.4.2 | None | ERR751597 | MDR-TB | lineage4.3.4.2 | pe | ERR12117896 | MDR-TB | lineage4.3.4.2 | None | SRR19303796 | Other | lineage4.3.3 | None | ERR11083060 | MDR-TB | lineage4.3.2 | None | ERR3287768 | MDR-TB | lineage4.3.4.2 | pe | ERR3287472 | MDR-TB | lineage4.3.4.2 | pe | ERR7911359 | HR-TB | lineage4.3.3 | None | ERR2516412 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR3287572 | MDR-TB | lineage4.3.4.2 | None | SRR18337390 | Sensitive | lineage4.8 | None | ERR7910844 | MDR-TB | lineage4.3.4.2 | None | ERR4813217 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR7069415 | Sensitive | lineage4.3.4.2 | None | ERR4812735 | HR-TB | lineage4.3.4.2 | pe | ERR3287492 | HR-TB | lineage4.3.4.2 | pe | ERR2707176 | MDR-TB | lineage4.3.4.1 | cd | ERR751572 | MDR-TB | lineage4.3.4.2 | pe | ERR11489040 | MDR-TB | lineage1.2.2.1 | None | ERR2707001 | MDR-TB | lineage4.3.3 | cd | ERR9029876 | HR-TB | lineage4.3.4.2 | None | ERR4810795 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207053 | MDR-TB | lineage2.2.1 | None | ERR551515 | RR-TB | lineage2.2.1 | None | ERR4813156 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR3287835 | MDR-TB | lineage4.3.4.2 | pe | ERR9285923 | Sensitive | lineage4.3.4.2 | None | DRR473798 | Sensitive | lineage2.2.1 | None | ERR6866134 | MDR-TB | lineage4.3.4.2 | None | ERR7911360 | HR-TB | lineage4.3.3 | None | ERR3287497 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR3287501 | MDR-TB | lineage4.1.1.1;lineage4.3.4.2 | None | ERR11488913 | MDR-TB | lineage1.2.2.1 | None | ERR751563 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR9029875 | MDR-TB | lineage4.1.1.1;lineage4.3.4.2 | None | SRR7070370 | Sensitive | lineage1.2.2.1 | None | ERR3287752 | MDR-TB | lineage4.3.4.2 | pe | SRR21677869 | Other | lineage4.9 | None | SRR5894882 | MDR-TB | lineage2.2.1 | None | ERR6865735 | MDR-TB | lineage4.3.4.2 | None | ERR12118022 | MDR-TB | lineage4.3.4.2 | None | ERR212110 | Sensitive | lineage1.2.2.1 | mw | ERR6879040 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR3287462 | HR-TB | lineage4.3.4.2 | None | ERR775387 | MDR-TB | lineage4.3.4.2 | pe | SRR21689444 | Sensitive | lineage4.1 | None | ERR12117975 | MDR-TB | lineage4.3.4.2 | None | ERR4024783 | HR-TB | lineage4.3.4.2 | None | SRR7592387 | Pre-XDR-TB | lineage4.8 | None | ERR2510877 | MDR-TB | lineage4.3.4.2 | it | ERR4811965 | HR-TB | lineage4.3.4.2 | pe | SRR21710727 | Other | lineage4.3.4.2 | None | ERR551514 | RR-TB | lineage2.2.1 | None | ERR3287478 | HR-TB | lineage4.3.4.2 | pe | SRR13870391 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813135 | HR-TB | lineage4.3.4.2 | None | ERR3287687 | MDR-TB | lineage4.3.4.2 | None | ERR4813630 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR3287567 | MDR-TB | lineage4.3.4.2 | None | ERR779921 | MDR-TB | lineage4.3.4.2 | pe | ERR4811777 | MDR-TB | lineage4.3.4.2 | pe | SRR28393308 | MDR-TB | lineage4.3.4.2 | None | SRR28393359 | MDR-TB | lineage4.3.4.2 | None | SRR28393790 | MDR-TB | lineage4.3.4.2 | None | SRR28393786 | MDR-TB | lineage4.3.4.2 | None | SRR28394218 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR11252611 | Sensitive | lineage1.2.2.1 | None | SRR28394068 | MDR-TB | lineage4.3.4.2 | None | SRR28393537 | MDR-TB | lineage4.3.4.2 | None | SRR28393358 | MDR-TB | lineage4.3.4.2 | None | SRR22461607 | MDR-TB | lineage4.3.4.2 | None | ERR2514175 | Sensitive | lineage1.2.2.1 | gb | ERR751368 | HR-TB | lineage4.3.4.2 | pe | ERR2513264 | Sensitive | lineage4.3.4.2 | gb | ERR2707180 | MDR-TB | lineage4.3.4.1 | cd | ERR7911002 | MDR-TB | lineage4.3.4.2 | pe | ERR3287394 | Pre-XDR-TB | lineage4.3.4.2 | pe | SRR6280156 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4178299 | MDR-TB | lineage4.3.4.2 | None | ERR4813554 | MDR-TB | lineage4.3.4.2 | None | ERR4812896 | MDR-TB | lineage4.3.4.2 | pe | ERR4813358 | MDR-TB | lineage4.3.4.2 | pe | ERR751574 | MDR-TB | lineage4.3.4.2 | pe | ERR3287583 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813195 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR779870 | MDR-TB | lineage4.3.4.2 | pe | SRR18337391 | Sensitive | lineage4.8 | None | SRR21576538 | MDR-TB | lineage2.2.1 | None | ERR4811335 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11082757 | MDR-TB | lineage4.3.4.2 | None | ERR845937 | MDR-TB | lineage4.3.4.2 | pe | ERR3287580 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR751477 | HR-TB | lineage4.3.4.2 | pe | ERR11488908 | MDR-TB | lineage1.2.2.1 | None | SRR23691398 | Sensitive | lineage2.2.1 | None | SAMEA5569694 | MDR-TB | lineage4.1.1.1;lineage4.3.4.2 | None | ERR4025134 | MDR-TB | lineage4.3.4.2 | None | ERR4811800 | HR-TB | lineage4.3.4.2 | None | ERR6866863 | MDR-TB | lineage4.3.4.2 | None | ERR3287659 | HR-TB | lineage4.3.4.2 | pe | SRR2024951 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1633785 | Sensitive | lineage4.3.3 | za | ERR2516480 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4812064 | MDR-TB | lineage4.3.4.2 | None | SAMEA5569854 | MDR-TB | lineage4.3.4.2 | None | ERR6865990 | HR-TB | lineage4.3.4.2 | None | ERR4813349 | MDR-TB | lineage4.3.4.2 | pe | SRR6280158 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11050998 | HR-TB | lineage4.3.3 | None | ERR3287666 | MDR-TB | lineage4.3.4.2 | pe | SRR19276643 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813449 | MDR-TB | lineage4.3.4.2 | pe | ERR7911342 | MDR-TB | lineage4.3.4.2 | pe | ERR279467 | Sensitive | lineage4.3.3 | None | ERR2513231 | Sensitive | lineage4.3.4.2 | None | ERR11488840 | MDR-TB | lineage1.2.2.1 | None | ERR6865384 | MDR-TB | lineage4.3.4.2 | None | ERR1034679 | MDR-TB | lineage4.3.3 | co | ERR779865 | MDR-TB | lineage4.3.4.2 | pe | ERR4829756 | MDR-TB | lineage4.3.4.2 | it | ERR2516696 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR751496 | MDR-TB | lineage4.3.4.2 | pe | SRR21279460 | MDR-TB | lineage4.5 | None | SRR13870400 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813490 | HR-TB | lineage4.3.4.2 | None | SRR23938629 | MDR-TB | lineage4.3.3 | None | ERR9029857 | MDR-TB | lineage4.3.4.2 | None | ERR4820218 | Sensitive | lineage4.3.4.1 | gb | ERR3287598 | HR-TB | lineage4.3.4.2 | pe | ERR2510132 | MDR-TB | lineage4.3.4.2 | pe | ERR751434 | MDR-TB | lineage4.3.4.2 | pe | ERR12117986 | MDR-TB | lineage4.3.4.2 | None | ERR6865475 | MDR-TB | lineage4.3.4.2 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR12117964 | MDR-TB | lineage4.3.4.2 | None | ERR4813057 | MDR-TB | lineage4.3.4.2 | None | ERR751396 | MDR-TB | lineage4.3.3;lineage4.3.4.2 | pe | ERR2510196 | MDR-TB | lineage4.3.4.2 | pe | ERR2510139 | HR-TB | lineage4.3.4.2 | pe | ERR2510679 | MDR-TB | lineage4.3.4.2 | it | ERR8975046 | MDR-TB | lineage1.2.2.1 | None | ERR4024559 | HR-TB | lineage4.3.4.2 | None | ERR400411 | Sensitive | lineage1.2.2.1 | gb | ERR11081128 | MDR-TB | lineage4.3.3 | None | ERR4822284 | Pre-XDR-TB | lineage2.2.1 | None | ERR6865796 | MDR-TB | lineage4.3.4.2 | None | ERR4813417 | MDR-TB | lineage4.3.4.2 | pe | ERR2184370 | MDR-TB | lineage4.3.4.2 | pe | ERR11050337 | HR-TB | lineage4.3.3 | None | ERR751425 | HR-TB | lineage4.3.4.2 | pe | ERR4813596 | MDR-TB | lineage4.3.4.2 | None | SRR10854751 | MDR-TB | lineage4.3.4.2 | None | ERR2510200 | HR-TB | lineage4.3.4.2 | pe | ERR3287840 | MDR-TB | lineage4.3.4.2 | pe | ERR7911372 | MDR-TB | lineage4.3.4.2 | pe | ERR3287770 | MDR-TB | lineage4.3.4.2 | pe | ERR779880 | MDR-TB | lineage4.3.4.2 | pe | ERR4024763 | MDR-TB | lineage4.3.4.2 | None | ERR751439 | MDR-TB | lineage4.3.4.2 | pe | ERR2513611 | Sensitive | lineage4.3.4.2 | None | ERR2516463 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR3273130 | Pre-XDR-TB | lineage4.4.2 | None | SRR22873595 | MDR-TB | lineage2.2.1 | None | SRR21722119 | Sensitive | lineage2.2.1.1 | None | ERR9117712 | Sensitive | lineage4.3.4.2 | None | ERR6866333 | MDR-TB | lineage4.3.4.2 | None | SRR16370511 | MDR-TB | lineage4.3.4.2 | None | SRR7070669 | Sensitive | lineage4.3.4.2 | None | ERR6865980 | MDR-TB | lineage4.3.4.2 | None | ERR4829671 | MDR-TB | lineage4.3.1 | it | ERR751463 | MDR-TB | lineage4.3.4.2 | pe | ERR4812356 | MDR-TB | lineage4.3.4.2 | pe | ERR4812836 | MDR-TB | lineage4.3.4.2 | None |
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