Rv3862c - c.235delG
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
49 Sensitive
3 RR-TB
12 HR-TB
63 MDR-TB
56 Pre-XDR-TB
6 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 108 |
| lineage4.1.2.1 | 14 |
| lineage1.2.1.1 | 3 |
| lineage4.4.2 | 3 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.1 | 12 |
| lineage4.6.1.1 | 5 |
| lineage4.8 | 13 |
| lineage2.2.2 | 5 |
| lineage4.3.4.1 | 2 |
| lineage4.4.1.1 | 4 |
| lineage4.9 | 1 |
| lineage4.6.2.2 | 4 |
| lineage2.2.1;lineage3 | 2 |
| lineage1.1.3.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.4.1.2 | 2 |
| lineage4.1.2.1;lineage4.8 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1.3 | 3 |
| lineage3 | 5 |
| lineage4.5 | 2 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 199 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR13266105 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024824 | MDR-TB | lineage4.1.2.1 | None | ERR5865250 | Pre-XDR-TB | lineage2.2.1 | None | ERR4178264 | MDR-TB | lineage4.1.2.1 | None | ERR2446488 | Other | lineage1.2.1.1 | nl | ERR11798602 | MDR-TB | lineage2.2.1 | None | ERR2179657 | Pre-XDR-TB | lineage4.4.2 | cn | ERR4797853 | Sensitive | lineage1.1.3.1 | in | SRR1723790 | Sensitive | lineage2.2.1 | cn | SRR1723791 | Sensitive | lineage2.2.1 | cn | SRR5153270 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275193 | Other | lineage1.2.1.1 | nl | ERR13258513 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13290940 | MDR-TB | lineage2.2.1 | None | SRR12420739 | MDR-TB | lineage2.2.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR7535065 | Sensitive | lineage4.6.1.1 | None | SRR16089912 | HR-TB | lineage4.8 | None | ERR6865912 | MDR-TB | lineage4.1.2.1 | None | SRR25534453 | Sensitive | lineage2.2.1 | None | ERR13265770 | Sensitive | lineage2.2.1 | None | SRR1723607 | MDR-TB | lineage2.2.1 | None | DRR188548 | Sensitive | lineage2.2.2 | None | SRR26937056 | MDR-TB | lineage2.2.1 | None | SRR12420390 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865247 | Pre-XDR-TB | lineage2.2.1 | None | SRR13583326 | MDR-TB | lineage4.3.4.1 | None | ERR13266893 | Pre-XDR-TB | lineage2.2.1 | None | SRR22137403 | XDR-TB | lineage2.2.1 | None | SRR26400079 | MDR-TB | lineage2.2.1 | None | ERR13266635 | Pre-XDR-TB | lineage2.2.1 | None | DRR130084 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR7911351 | MDR-TB | lineage4.1.2.1 | None | ERR9119839 | MDR-TB | lineage2.2.1 | None | SRR22351859 | Pre-XDR-TB | lineage2.2.1 | None | ERR10610260 | RR-TB | lineage4.4.1.1 | None | ERR13291093 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797657 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797556 | Pre-XDR-TB | lineage2.2.1 | in | SRR1180318 | Sensitive | lineage2.2.1 | None | ERR4799935 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799314 | Pre-XDR-TB | lineage2.2.1 | in | SRR25207247 | MDR-TB | lineage2.2.2 | None | ERR4822370 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR22249392 | Sensitive | lineage4.9 | None | ERR11811381 | Sensitive | lineage4.8 | None | SRR28046144 | MDR-TB | lineage2.2.1 | None | ERR4811128 | Pre-XDR-TB | lineage2.2.1 | cn | ERR11068231 | HR-TB | lineage2.2.1 | None | SRR21031731 | Sensitive | lineage2.2.1 | None | ERR4830373 | MDR-TB | lineage2.2.1 | vn | SRR16156826 | MDR-TB | lineage2.2.1 | None | ERR2512600 | HR-TB | lineage4.6.2.2 | gb | SRR6824611 | MDR-TB | lineage2.2.1 | cn | SRR6824295 | MDR-TB | lineage2.2.1 | cn | SRR13870416 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR130086 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR7737639 | MDR-TB | lineage2.2.1 | None | ERR13245232 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR27450452 | Sensitive | lineage2.2.1 | None | SRR28351470 | Pre-XDR-TB | lineage2.2.1 | None | SRR22461592 | MDR-TB | lineage4.1.2.1 | None | SRR12420313 | MDR-TB | lineage2.2.1 | None | SRR5073766 | Sensitive | lineage2.2.1 | vn | ERR13265547 | Other | lineage2.2.1 | None | ERR4813625 | HR-TB | lineage4.1.2.1 | None | SRR25515682 | MDR-TB | lineage2.2.1 | None | ERR4798183 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800480 | Pre-XDR-TB | lineage2.2.1 | in | ERR11082341 | MDR-TB | lineage2.2.1 | None | ERR4810622 | XDR-TB | lineage2.2.1 | cn | SRR11444222 | Sensitive | lineage4.6.2.2 | None | SRR14801437 | Sensitive | lineage4.8 | None | SRR16156825 | MDR-TB | lineage2.2.1 | None | SRR22048543 | Sensitive | lineage4.8 | None | SRR3105800 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR28409559 | Sensitive | lineage2.2.1 | None | SRR26399935 | Other | lineage2.2.1 | None | SRR29096967 | HR-TB | lineage1.1.3.3 | None | ERR11811362 | Sensitive | lineage4.8 | None | SRR29096108 | Sensitive | lineage2.2.1 | None | ERR13291098 | Pre-XDR-TB | lineage2.2.1 | None | SRR8380892 | MDR-TB | lineage4.2.2.2 | in | SRR29230838 | Sensitive | lineage4.3.3 | None | ERR13266490 | XDR-TB | lineage2.2.1 | None | ERR13266146 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937047 | Pre-XDR-TB | lineage2.2.1 | None | SRR9588014 | MDR-TB | lineage4.4.1.1 | None | SRR29356796 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798173 | Pre-XDR-TB | lineage2.2.1 | in | SRR21576568 | MDR-TB | lineage2.2.1 | None | SRR1181160 | Sensitive | lineage2.2.1 | None | ERR4799808 | Pre-XDR-TB | lineage2.2.1 | in | SRR28393309 | MDR-TB | lineage4.1.2.1 | None | ERR13290827 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181087 | Sensitive | lineage2.2.1 | None | SRR12142414 | MDR-TB | lineage2.2.1 | None | ERR5865248 | Pre-XDR-TB | lineage2.2.1 | None | SRR671831 | MDR-TB | lineage4.4.2 | cn | SRR1180404 | Sensitive | lineage2.2.1 | None | ERR2184487 | Sensitive | lineage4.4.1.2 | pe | SRR22248475 | Sensitive | lineage4.1.2.1;lineage4.8 | None | ERR3287695 | MDR-TB | lineage4.1.2.1 | pe | SRR28467020 | Pre-XDR-TB | lineage2.2.2 | None | SRR28044490 | Sensitive | lineage1.1.2 | None | ERR751421 | MDR-TB | lineage4.1.2.1 | pe | ERR4832024 | MDR-TB | lineage2.2.1 | vn | ERR4832006 | MDR-TB | lineage2.2.1 | vn | SRR26936992 | MDR-TB | lineage2.2.1 | None | ERR1465894 | Other | lineage4.8 | ch | ERR2513248 | Sensitive | lineage3.1.3 | gb | ERR2513313 | Sensitive | lineage3 | gb | SRR24256015 | HR-TB | lineage4.8 | None | SRR12142372 | MDR-TB | lineage2.2.1 | None | SRR22249759 | Other | lineage2.2.1 | None | SRR28351280 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284029 | MDR-TB | lineage2.2.1 | None | ERR2517328 | Other | lineage1.2.1.1 | nl | ERR9806807 | RR-TB | lineage4.4.1.1 | None | SRR25515275 | Sensitive | lineage2.2.1 | None | SRR25628606 | MDR-TB | lineage4.5 | None | ERR13267010 | Pre-XDR-TB | lineage2.2.1 | None | ERR2512536 | Sensitive | lineage3.1.3 | None | SRR22250105 | Sensitive | lineage2.2.1 | None | ERR6865426 | MDR-TB | lineage4.1.2.1 | None | ERR229978 | Pre-XDR-TB | lineage2.2.1 | ru | SRR10808521 | Sensitive | lineage4.4.1.2 | None | SRR14782801 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR1723608 | MDR-TB | lineage2.2.1 | None | ERR10225488 | Sensitive | lineage3 | None | ERR9119248 | Other | lineage2.2.1 | None | SRR28044998 | Sensitive | lineage3 | None | ERR6362764 | MDR-TB | lineage2.2.1 | None | ERR751989 | Sensitive | lineage4.5 | None | ERR6358867 | MDR-TB | lineage4.6.1.1 | None | SRR16156843 | MDR-TB | lineage2.2.1 | None | SRR1723859 | HR-TB | lineage2.2.1 | cn | ERR13291472 | HR-TB | lineage4.8 | None | SRR1723711 | MDR-TB | lineage2.2.1 | cn | SRR1723712 | MDR-TB | lineage2.2.1 | cn | ERR13246292 | Sensitive | lineage2.2.2 | None | SRR21576586 | MDR-TB | lineage2.2.1 | None | SRR6797831 | Sensitive | lineage2.2.1 | None | SRR24083726 | Sensitive | lineage2.2.1 | None | SRR29093124 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR11444234 | Sensitive | lineage4.6.2.2 | None | SRR26399997 | Other | lineage2.2.1 | None | SRR13870427 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9119255 | MDR-TB | lineage2.2.1 | None | SRR25827364 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | ERR6358864 | MDR-TB | lineage4.6.1.1 | None | ERR13261117 | Pre-XDR-TB | lineage2.2.1 | None | SRR28470233 | HR-TB | lineage4.8 | None | ERR11044728 | Sensitive | lineage4.3.3 | None | ERR13266808 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR7645956 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267003 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358710 | MDR-TB | lineage4.6.1.1 | None | SRR29289137 | XDR-TB | lineage3 | None | ERR9786156 | Sensitive | lineage4.8 | None | SRR14801666 | MDR-TB | lineage2.2.1 | None | ERR4797882 | Sensitive | lineage4.8 | in | SRR786667 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798934 | MDR-TB | lineage2.2.1;lineage4 | in | ERR6866609 | Sensitive | lineage4.3.2 | None | ERR4799502 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR5865249 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420308 | HR-TB | lineage2.2.1 | None | ERR4800354 | Pre-XDR-TB | lineage2.2.1 | in | ERR4819048 | Sensitive | lineage4.6.1.1 | None | SRR29051568 | MDR-TB | lineage4.3.4.1 | None | DRR473747 | HR-TB | lineage2.2.1.1 | None | ERR4800185 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800226 | Pre-XDR-TB | lineage2.2.1 | in | ERR4822349 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR7911352 | MDR-TB | lineage4.1.2.1 | None | ERR4810965 | MDR-TB | lineage2.2.2 | cn | SRR3105742 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR28496680 | HR-TB | lineage4.8 | None | SAMN03246351 | MDR-TB | lineage2.2.1 | cn | SRR12420354 | MDR-TB | lineage2.2.1 | None | SRR26399575 | MDR-TB | lineage2.2.1 | None | ERR7911353 | MDR-TB | lineage4.1.2.1 | None | SRR29096865 | RR-TB | lineage4.4.1.1 | None | ERR13258004 | Pre-XDR-TB | lineage2.2.1.1 | None | SAMN02585901 | Sensitive | lineage2.2.1 | za | SRR5065526 | MDR-TB | lineage2.2.1 | vn | SRR12420432 | MDR-TB | lineage2.2.1 | None | SRR22175209 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865251 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156837 | MDR-TB | lineage2.2.1 | None | ERR9117781 | Sensitive | lineage3.1.3 | None | ERR4830004 | MDR-TB | lineage4.6.2.2 | None | ERR4830286 | Other | lineage2.2.1 | vn | SRR25207110 | XDR-TB | lineage2.2.1 | None | ERR11050700 | Sensitive | lineage3 | None | ERR9786231 | Sensitive | lineage4.8 | None | SRR1723994 | Pre-XDR-TB | lineage4.4.2 | cn | ERR13266600 | Pre-XDR-TB | lineage2.2.1 | None |
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