lineage | Count |
---|---|
lineage1.2.2.2 | 11 |
lineage4.3.3 | 5 |
lineage3 | 4 |
lineage4.3.2.1 | 12 |
lineage1.1.3.1 | 6 |
lineage4.5 | 6 |
lineage4.1.1.3 | 1 |
lineage4.3.2 | 1 |
lineage2.2.1 | 1 |
lineage4.1.2.1 | 14 |
lineage2.2.2 | 2 |
lineage3.1.2 | 1 |
lineage1.1.2;lineage3 | 1 |
lineage1.1.2 | 5 |
lineage4.2.2.2 | 1 |
lineage1.1.1 | 1 |
lineage4.7 | 1 |
lineage4.1.1.1 | 2 |
1 | |
lineage3.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.8 | 1 |
lineage1.2.1.2 | 1 |
lineage3.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 81 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR4423177 | Pre-XDR-TB | lineage1.2.2.2 | None |
SRR12931698 | Sensitive | lineage4.3.3 | None |
ERR13388692 | Sensitive | lineage3 | None |
SRR1196540 | MDR-TB | lineage4.3.2.1 | None |
ERR4553924 | HR-TB | lineage1.1.3.1 | None |
SRR29017160 | Pre-XDR-TB | lineage1.2.2.2 | None |
ERR4831489 | Pre-XDR-TB | lineage4.5 | None |
SRR29093810 | RR-TB | lineage4.1.1.3 | None |
SRR21689717 | Sensitive | lineage4.3.2 | None |
DRR473934 | HR-TB | lineage2.2.1 | None |
ERR6865626 | Sensitive | lineage4.3.3 | None |
SRR7781501 | Pre-XDR-TB | lineage4.1.2.1 | None |
SRR10040525 | Pre-XDR-TB | lineage2.2.2 | None |
SRR29017060 | XDR-TB | lineage1.2.2.2 | None |
SRR21727768 | Sensitive | lineage4.1.2.1 | None |
ERR4553582 | RR-TB | lineage1.2.2.2 | None |
SRR29772745 | Pre-XDR-TB | lineage3.1.2 | None |
SRR1175091 | MDR-TB | lineage4.3.2.1 | None |
SRR29017432 | HR-TB | lineage1.1.3.1 | None |
SRR25340766 | Sensitive | lineage1.1.2;lineage3 | None |
SRR29016885 | Pre-XDR-TB | lineage1.2.2.2 | None |
ERR13290190 | Other | lineage1.1.2 | None |
ERR4831501 | Pre-XDR-TB | lineage4.2.2.2 | pk |
SRR5074057 | HR-TB | lineage1.1.1 | vn |
SRR28394210 | Pre-XDR-TB | lineage4.7 | None |
ERR046825 | RR-TB | lineage4.1.1.1 | gb |
SRR6797626 | MDR-TB | lineage3 | None |
ERR4553577 | RR-TB | lineage1.2.2.2 | None |
ERR4553882 | RR-TB | None | |
ERR9992885 | Pre-XDR-TB | lineage4.3.2.1 | None |
SAMEA3715558 | MDR-TB | lineage4.1.2.1 | rs |
ERR11082310 | MDR-TB | lineage4.1.2.1 | None |
ERR11049762 | Sensitive | lineage1.1.2 | None |
SRR25340869 | Sensitive | lineage3 | None |
ERR4553954 | HR-TB | lineage1.1.3.1 | None |
ERR1367634 | MDR-TB | lineage4.1.2.1 | None |
ERR4800631 | Sensitive | lineage1.2.2.2 | None |
SRR6046739 | Other | lineage1.1.2 | None |
ERR2041750 | MDR-TB | lineage4.1.2.1 | rs |
SAMN02586021 | MDR-TB | lineage4.3.2.1 | za |
ERR4024765 | Sensitive | lineage4.3.3 | None |
SRR25340986 | Sensitive | lineage3 | None |
ERR9993039 | Pre-XDR-TB | lineage4.3.2.1 | None |
SRR1173001 | MDR-TB | lineage4.3.2.1 | None |
ERR4798180 | Sensitive | lineage3.1 | in |
SRR1184355 | MDR-TB | lineage4.3.2.1 | None |
SRR12006611 | HR-TB | lineage1.2.1.2.1 | None |
SAMN02585986 | MDR-TB | lineage4.3.2.1 | za |
SRR1196572 | MDR-TB | lineage4.3.2.1 | None |
ERR2041757 | MDR-TB | lineage4.1.2.1 | rs |
SRR7898227 | Pre-XDR-TB | lineage1.1.2 | in |
ERR1394280 | Pre-XDR-TB | lineage1.1.2 | None |
ERR4553505 | MDR-TB | lineage1.1.3.1 | None |
SRR1173516 | MDR-TB | lineage4.3.2.1 | None |
ERR4553789 | RR-TB | lineage1.2.2.2 | None |
ERR2179733 | MDR-TB | lineage4.5 | cn |
SRR6797812 | MDR-TB | lineage4.8 | None |
SRR29772620 | Pre-XDR-TB | lineage4.3.3 | None |
ERR13276346 | MDR-TB | lineage4.1.2.1 | None |
SRR12882106 | Sensitive | lineage1.2.1.2 | None |
ERR13261941 | Pre-XDR-TB | lineage4.3.3 | None |
SRR29017647 | Pre-XDR-TB | lineage1.2.2.2 | None |
SRR29017651 | Pre-XDR-TB | lineage1.2.2.2 | None |
ERR2041726 | MDR-TB | lineage4.1.2.1 | None |
SRR29017150 | MDR-TB | lineage1.1.3.1 | None |
ERR4799553 | HR-TB | lineage3.1.2.1 | None |
ERR1465793 | MDR-TB | lineage4.1.2.1 | None |
ERR4828821 | Pre-XDR-TB | lineage4.1.2.1 | None |
SRR21887751 | MDR-TB | lineage4.5 | None |
ERR4829042 | Pre-XDR-TB | lineage4.1.2.1 | it |
ERR2041725 | MDR-TB | lineage4.1.2.1 | None |
SRR29289168 | Pre-XDR-TB | lineage4.5 | None |
SRR29289167 | Pre-XDR-TB | lineage4.5 | None |
SRR1184361 | MDR-TB | lineage4.3.2.1 | None |
ERR4828866 | Pre-XDR-TB | lineage4.1.2.1 | None |
SRR29017606 | MDR-TB | lineage1.2.2.2 | None |
ERR046943 | RR-TB | lineage4.1.1.1 | gb |
SRR22873599 | Pre-XDR-TB | lineage2.2.2 | None |
ERR9992636 | Pre-XDR-TB | lineage4.3.2.1 | None |
ERR13290851 | Sensitive | lineage4.5 | None |
SRR29017379 | MDR-TB | lineage1.1.3.1 | None |