Run ID: ERR4800631
Sample name:
Date: 01-04-2023 09:57:20
Number of reads: 2481348
Percentage reads mapped: 99.35
Strain: lineage1.2.2.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 0.99 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 0.98 |
lineage1.2.2.2 | Indo-Oceanic | NA | RD239 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 0.97 |
gyrB | 6112 | p.Met291Ile | missense_variant | 0.99 |
gyrA | 7268 | c.-34C>T | upstream_gene_variant | 0.96 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 0.99 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.98 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.3 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 0.98 |
rpoC | 763886 | c.517C>A | synonymous_variant | 0.98 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406161 | p.Ala394Thr | missense_variant | 0.94 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.99 |
PPE35 | 2167867 | p.Leu916Val | missense_variant | 0.96 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168742 | p.Gly624Asp | missense_variant | 0.99 |
PPE35 | 2169041 | c.1572G>A | synonymous_variant | 0.43 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.33 |
PPE35 | 2169047 | p.Ile522Val | missense_variant | 0.33 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 1.0 |
PPE35 | 2169056 | c.1557A>G | synonymous_variant | 0.33 |
PPE35 | 2169059 | c.1554G>A | synonymous_variant | 0.67 |
PPE35 | 2169063 | p.Met517Thr | missense_variant | 1.0 |
PPE35 | 2169065 | p.Ala516Ile | missense_variant | 0.67 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 0.69 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.29 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.19 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2222596 | p.Val190Ala | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289035 | c.207A>G | synonymous_variant | 0.99 |
kasA | 2518132 | c.18C>T | synonymous_variant | 0.97 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.33 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474333 | c.327T>C | synonymous_variant | 0.97 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
alr | 3840742 | p.Val227Met | missense_variant | 0.99 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.17 |
ddn | 3986805 | c.-39G>T | upstream_gene_variant | 0.98 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 0.97 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.99 |
embC | 4241042 | p.Asn394Asp | missense_variant | 0.99 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.25 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.99 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.22 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 0.94 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 0.97 |
ethA | 4326148 | c.1326G>T | synonymous_variant | 0.98 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 1.0 |
whiB6 | 4338203 | p.Arg107Cys | missense_variant | 0.93 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 0.98 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |
gid | 4407979 | p.Pro75Leu | missense_variant | 0.98 |