Run ID: ERR046828
Sample name:
Date: 31-03-2023 08:52:36
Number of reads: 6522313
Percentage reads mapped: 99.4
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5681 | p.Gln148Glu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490696 | c.-87T>G | upstream_gene_variant | 0.21 |
fgd1 | 491027 | p.Asn82Thr | missense_variant | 0.25 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.18 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.99 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777399 | p.Thr361Arg | missense_variant | 0.17 |
mmpR5 | 779371 | p.Ala128Pro | missense_variant | 0.21 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.18 |
rrs | 1471658 | n.-188T>G | upstream_gene_variant | 0.16 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476408 | n.2751G>C | non_coding_transcript_exon_variant | 0.19 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.25 |
inhA | 1674952 | p.Pro251Ala | missense_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.25 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.34 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.19 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.26 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.22 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087811 | p.Ala331Gly | missense_variant | 0.26 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.99 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.18 |
alr | 3840268 | p.Thr385Pro | missense_variant | 0.19 |
ddn | 3986849 | c.6G>T | synonymous_variant | 0.99 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.2 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.19 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.22 |
clpC1 | 4039667 | p.Gln346His | missense_variant | 0.99 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.33 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.33 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.24 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.34 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.2 |
embA | 4244212 | p.Pro327Leu | missense_variant | 1.0 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.19 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.29 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.24 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |