Run ID: ERR11043324
Sample name:
Date: 31-03-2023 11:32:10
Number of reads: 4337154
Percentage reads mapped: 99.66
Strain: lineage4.7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.7 | Euro-American (mainly T) | T1;T5 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5870 | p.Glu211Gln | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7606 | p.Pro102Arg | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.3 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775878 | p.Thr868Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416814 | c.534G>A | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474294 | n.637C>G | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 0.98 |
PPE35 | 2170675 | c.-63G>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289355 | c.-114C>T | upstream_gene_variant | 1.0 |
Rv2752c | 3067132 | c.-941T>C | upstream_gene_variant | 1.0 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 1.0 |
alr | 3841568 | c.-148G>A | upstream_gene_variant | 1.0 |
alr | 3841570 | c.-151delA | upstream_gene_variant | 1.0 |
alr | 3841574 | c.-154T>G | upstream_gene_variant | 1.0 |
alr | 3841578 | c.-158G>T | upstream_gene_variant | 1.0 |
alr | 3841582 | c.-162A>G | upstream_gene_variant | 1.0 |
alr | 3841584 | c.-164C>A | upstream_gene_variant | 1.0 |
alr | 3841589 | c.-170delG | upstream_gene_variant | 1.0 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 1.0 |
ddn | 3987024 | p.Val61Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.3 |
embB | 4249732 | c.3219C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |