Run ID: ERR11050775
Sample name:
Date: 03-04-2023 20:32:42
Number of reads: 3302979
Percentage reads mapped: 99.38
Strain: lineage1.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 1.0 |
lineage1.2.1 | Indo-Oceanic | EAI2 | RD239 | 1.0 |
lineage1.2.1.1 | Indo-Oceanic | NA | RD239 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 0.99 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9260 | c.1959G>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.18 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576442 | p.Cys365Trp | missense_variant | 0.16 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.18 |
mshA | 576468 | p.Val374Gly | missense_variant | 0.33 |
mshA | 576613 | c.1266A>C | synonymous_variant | 0.26 |
mshA | 576618 | p.His424Pro | missense_variant | 0.28 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775746 | p.Met912Thr | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.3 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.26 |
rpsA | 1834729 | c.1188C>T | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.26 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.99 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2519035 | c.921C>T | synonymous_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.31 |
eis | 2714474 | p.Thr287Ala | missense_variant | 1.0 |
eis | 2714669 | p.Gly222Arg | missense_variant | 1.0 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.99 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.24 |
fbiD | 3339417 | c.300A>G | synonymous_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.75 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
Rv3083 | 3448835 | p.Ser111Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.33 |
Rv3236c | 3612099 | p.Ile340Val | missense_variant | 1.0 |
fbiB | 3640557 | c.-978T>C | upstream_gene_variant | 1.0 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.67 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.29 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244420 | c.1188G>C | synonymous_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.54 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.22 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethR | 4327360 | c.-189C>G | upstream_gene_variant | 1.0 |
ethR | 4328076 | p.Asn176Lys | missense_variant | 1.0 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.16 |
whiB6 | 4338361 | p.Arg54Gln | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.99 |