Run ID: ERR2179840
Sample name:
Date: 27-03-2023 10:08:15
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.99 |
gyrA | 9341 | c.2040C>T | synonymous_variant | 0.99 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.99 |
mshA | 575920 | c.573C>T | synonymous_variant | 1.0 |
ccsA | 620043 | c.153C>G | synonymous_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472674 | n.829T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472677 | n.832C>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472682 | n.837T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472683 | n.838T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472685 | n.840G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474692 | n.1035G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474740 | n.1083G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1474741 | n.1084G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474747 | n.1090C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474749 | n.1092C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474753 | n.1097delC | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474780 | n.1123C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476528 | n.2871A>G | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.97 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170797 | c.-185A>G | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3065072 | p.Gly374Ser | missense_variant | 0.99 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4267782 | p.Val352Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |