Run ID: ERR2503450
Sample name:
Date: 31-03-2023 18:28:02
Number of reads: 445988
Percentage reads mapped: 99.59
Strain: lineage4.5
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
gid | 4407851 | c.351delG | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6094 | c.855C>T | synonymous_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406101 | p.Pro414Ser | missense_variant | 1.0 |
embR | 1416528 | p.Val274Phe | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472730 | n.885A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475378 | n.1721A>G | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289888 | c.-647G>A | upstream_gene_variant | 0.2 |
pncA | 2290104 | c.-863G>A | upstream_gene_variant | 0.22 |
eis | 2714411 | p.Arg308Cys | missense_variant | 0.11 |
Rv2752c | 3064799 | c.1391_1392delAG | frameshift_variant | 0.25 |
thyX | 3067708 | p.Phe80Leu | missense_variant | 0.11 |
Rv3083 | 3448675 | p.Asp58His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474588 | c.582G>C | synonymous_variant | 1.0 |
Rv3236c | 3612306 | p.Ala271Thr | missense_variant | 0.2 |
alr | 3841546 | c.-126C>A | upstream_gene_variant | 1.0 |
alr | 3841568 | c.-148G>A | upstream_gene_variant | 1.0 |
alr | 3841570 | c.-151delA | upstream_gene_variant | 1.0 |
alr | 3841574 | c.-154T>G | upstream_gene_variant | 1.0 |
alr | 3841578 | c.-158G>T | upstream_gene_variant | 1.0 |
alr | 3841582 | c.-162A>G | upstream_gene_variant | 1.0 |
alr | 3841584 | c.-164C>A | upstream_gene_variant | 1.0 |
alr | 3841589 | c.-170delG | upstream_gene_variant | 1.0 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
clpC1 | 4039745 | c.960C>T | synonymous_variant | 1.0 |
embC | 4241764 | c.1902C>T | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242984 | p.Arg1041His | missense_variant | 0.14 |
aftB | 4268802 | p.Ala12Val | missense_variant | 0.14 |
ethA | 4326005 | c.1469A>G | stop_lost&splice_region_variant | 0.12 |
ethA | 4327205 | p.Ala90Val | missense_variant | 1.0 |
whiB6 | 4338594 | c.-73T>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408398 | c.-196C>G | upstream_gene_variant | 1.0 |