Run ID: ERR2514035
Sample name:
Date: 31-03-2023 20:04:21
Number of reads: 1202531
Percentage reads mapped: 64.72
Strain: lineage3.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
lineage3.1 | East-African-Indian | Non-CAS1-Delhi | RD750 | 1.0 |
lineage3.1.2 | East-African-Indian | CAS;CAS2 | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.21 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
ccsA | 620175 | c.285C>T | synonymous_variant | 0.17 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoB | 761630 | c.1824G>A | synonymous_variant | 0.15 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406293 | p.Gly350Arg | missense_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472846 | n.1001C>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473916 | n.259C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474059 | n.402C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474665 | n.1008A>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475015 | n.1358C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475774 | n.2117C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475800 | n.2143C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476289 | n.2632C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476403 | n.2746G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476550 | n.2893G>A | non_coding_transcript_exon_variant | 0.25 |
inhA | 1674981 | c.780C>A | synonymous_variant | 0.2 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918696 | p.Ala253Pro | missense_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155914 | c.198G>A | synonymous_variant | 0.15 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.97 |
PPE35 | 2168604 | p.Pro670Leu | missense_variant | 1.0 |
PPE35 | 2170150 | p.His155Asn | missense_variant | 0.15 |
Rv1979c | 2223257 | c.-93G>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2518624 | c.510C>T | synonymous_variant | 0.14 |
kasA | 2518896 | p.Pro261Leu | missense_variant | 0.14 |
kasA | 2519164 | c.1050C>T | synonymous_variant | 0.29 |
eis | 2714992 | p.Pro114Leu | missense_variant | 0.13 |
eis | 2715432 | c.-100C>T | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ahpC | 2726672 | p.Glu160Asp | missense_variant | 0.1 |
folC | 2746837 | c.762G>A | synonymous_variant | 0.14 |
pepQ | 2860037 | p.Val128Met | missense_variant | 0.13 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475052 | p.Asn349Thr | missense_variant | 1.0 |
fbiB | 3642120 | p.Asp196Asn | missense_variant | 0.12 |
fbiB | 3642238 | p.Pro235Leu | missense_variant | 0.13 |
embC | 4240375 | c.513G>A | synonymous_variant | 0.2 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243244 | c.12C>T | synonymous_variant | 0.12 |
embB | 4246565 | p.Gly18Arg | missense_variant | 0.14 |
embB | 4246606 | c.93C>T | synonymous_variant | 0.14 |
embB | 4248241 | c.1728C>G | synonymous_variant | 1.0 |
embB | 4249238 | p.Ala909Thr | missense_variant | 0.12 |
ethR | 4327693 | p.Asp49Asn | missense_variant | 1.0 |
ethA | 4328444 | c.-971C>T | upstream_gene_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.95 |
gid | 4408147 | p.Ala19Val | missense_variant | 1.0 |