Run ID: ERR2515418
Sample name:
Date: 31-03-2023 20:55:41
Number of reads: 756039
Percentage reads mapped: 99.63
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 761788 | p.Arg661Gln | missense_variant | 0.11 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpR5 | 779218 | p.Phe77Leu | missense_variant | 0.13 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
Rv1258c | 1406774 | c.567C>G | synonymous_variant | 0.11 |
embR | 1416454 | c.893delG | frameshift_variant | 0.13 |
embR | 1417134 | p.Ile72Phe | missense_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103226 | c.-184C>G | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169935 | c.677delA | frameshift_variant | 0.18 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289300 | c.-59G>A | upstream_gene_variant | 0.12 |
pncA | 2290206 | c.-965C>G | upstream_gene_variant | 0.11 |
kasA | 2519358 | c.1246delT | frameshift_variant | 0.14 |
folC | 2747007 | p.Ser198Cys | missense_variant | 0.11 |
pepQ | 2859673 | p.Ile249Thr | missense_variant | 0.11 |
pepQ | 2859918 | c.501A>T | synonymous_variant | 0.12 |
ald | 3086739 | c.-81G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475249 | p.Pro415Thr | missense_variant | 0.11 |
Rv3236c | 3612604 | c.513T>C | synonymous_variant | 0.14 |
Rv3236c | 3612702 | p.Asp139His | missense_variant | 0.12 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiB | 3642052 | p.Leu173Gln | missense_variant | 0.15 |
rpoA | 3878443 | p.Val22Glu | missense_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243854 | p.Leu208Phe | missense_variant | 0.1 |
embA | 4244820 | p.Gly530Arg | missense_variant | 0.11 |
embA | 4246212 | c.2982delC | frameshift_variant | 0.12 |
embA | 4246513 | p.Pro1094Gln | missense_variant | 0.1 |
embB | 4247393 | p.Gly294Cys | missense_variant | 0.12 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |