Run ID: ERR3273089
Sample name:
Date: 01-04-2023 01:10:41
Number of reads: 2985642
Percentage reads mapped: 99.36
Strain: lineage4.5
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2154973 | p.Thr380Ile | missense_variant | 1.0 | isoniazid |
pncA | 2288869 | p.Val125Phe | missense_variant | 0.22 | pyrazinamide |
pncA | 2288934 | p.Tyr103Cys | missense_variant | 0.17 | pyrazinamide |
pncA | 2289114 | p.His43Pro | missense_variant | 0.45 | pyrazinamide |
ahpC | 2726145 | c.-48G>A | upstream_gene_variant | 0.64 | isoniazid |
embB | 4247429 | p.Met306Val | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.99 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoC | 766485 | p.Val1039Ala | missense_variant | 0.21 |
rpoC | 766789 | c.3420G>A | synonymous_variant | 0.98 |
rpoC | 766825 | p.Lys1152Asn | missense_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472176 | n.331G>A | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154047 | p.Trp689Gly | missense_variant | 1.0 |
katG | 2156199 | c.-88G>A | upstream_gene_variant | 0.99 |
katG | 2156258 | c.-148_-147insA | upstream_gene_variant | 0.99 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2859673 | p.Ile249Ser | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878333 | p.Val59Leu | missense_variant | 1.0 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 0.98 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 0.99 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ubiA | 4269284 | p.Ser184Ala | missense_variant | 0.16 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407766 | p.Thr146Lys | missense_variant | 0.17 |