ERR2497898
|
MDR-TB
|
lineage4.9
|
None
|
SRR25207025
|
MDR-TB
|
lineage4.5
|
None
|
SRR7517806
|
MDR-TB
|
lineage2.2.1
|
ch
|
ERR552432
|
MDR-TB
|
lineage4.1.3
|
cg
|
ERR7737683
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR8025725
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093191
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR20969744
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SRR28045655
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11774973
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR13261396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28467020
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28339299
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351277
|
MDR-TB
|
lineage4.8
|
None
|
SRR28339300
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993208
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2497899
|
MDR-TB
|
lineage4.9
|
None
|
SRR6855776
|
HR-TB
|
lineage4.3.4.2
|
None
|
SRR29053314
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR2707086
|
MDR-TB
|
lineage4.9
|
cd
|
ERR4796858
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
ERR13289008
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.1.1.3
|
None
|
ERR13289493
|
HR-TB
|
lineage4.2.1
|
None
|
ERR11081139
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29772776
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR8975725
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR25207157
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810648
|
HR-TB
|
lineage2.2.1
|
cn
|
SRR26399314
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13267114
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR6797723
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR6824677
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29055524
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11775350
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29093367
|
MDR-TB
|
lineage4.5
|
None
|
SRR29093268
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9806897
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911593
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR1723539
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21277847
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207348
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29096562
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR552431
|
MDR-TB
|
lineage4.1.3
|
cg
|
ERR13289406
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8025541
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8025744
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9807000
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR25207170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041707
|
MDR-TB
|
lineage4
|
None
|
ERR2704812
|
MDR-TB
|
lineage5.2
|
fr
|
SRR29093572
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1048862
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4830602
|
Pre-XDR-TB
|
lineage4.2.1
|
tm
|
ERR10748237
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR9806988
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10112839
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10680017
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1199114
|
MDR-TB
|
lineage4.6.1.2
|
ug
|
SRR6824452
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2497901
|
MDR-TB
|
lineage4.9
|
None
|
ERR2497908
|
HR-TB
|
lineage4.9
|
None
|
SRR5709992
|
MDR-TB
|
lineage2.2.1
|
th
|
SRR29273722
|
MDR-TB
|
lineage4.1.2.1
|
None
|
DRR130133
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR133945
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4827634
|
HR-TB
|
lineage2.2.1
|
None
|
ERR552195
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9119744
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR10305643
|
HR-TB
|
lineage2.2.1
|
None
|
ERR8025698
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4822365
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806997
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4822581
|
MDR-TB
|
lineage4.2.1
|
tm
|
SRR8651557
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
SRR29056326
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10679991
|
MDR-TB
|
lineage1.1.1
|
None
|
SRR9224996
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1003106
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13276408
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR25534471
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29539089
|
HR-TB
|
lineage2.2.1
|
None
|
SRR25827883
|
Pre-XDR-TB
|
lineage3;lineage4.2.2.2
|
None
|
SAMN02360602
|
MDR-TB
|
lineage4.4.2
|
kr
|
ERR718507
|
HR-TB
|
lineage2.2.1
|
th
|
SRR25534200
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873550
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR22137417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553562
|
HR-TB
|
lineage1.1.3.1
|
None
|
SRR6930917
|
HR-TB
|
lineage4.3.2
|
None
|
ERR4831557
|
Pre-XDR-TB
|
lineage4.1.1.3;lineage4.3.2.1
|
None
|
SRR16156755
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9119741
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR8025692
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SAMN03246321
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR7911663
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR5987458
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29096852
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29358136
|
HR-TB
|
lineage4.1.1.3;lineage4.9
|
None
|
SRR29051211
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11081762
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR25395660
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9806888
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4011942
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4872079
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25207393
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827380
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR25827500
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1723535
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096577
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2513608
|
MDR-TB
|
lineage4.2.1
|
gb
|
ERR2497897
|
MDR-TB
|
lineage4.9
|
None
|
SRR6824521
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13284913
|
MDR-TB
|
lineage4.8
|
None
|
ERR9992833
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR19276611
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR23340019
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR10869252
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR10315638
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR16156687
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR5918023
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR21887760
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29093456
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR6982495
|
HR-TB
|
lineage4.3.4.2
|
None
|
SRR29093310
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4821668
|
HR-TB
|
lineage4.2.1
|
gb
|
ERR270768
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3103491
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR28394248
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR2707058
|
MDR-TB
|
lineage4.9
|
cd
|
ERR10112889
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4011943
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29096872
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR25515163
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737735
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR7911596
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SAMEA2533962
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR11043661
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13286099
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911636
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.1.1.3
|
za
|
ERR4828008
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9993229
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11082633
|
HR-TB
|
lineage4.3.3
|
None
|
ERR10748315
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16370448
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
DRR474015
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4799641
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR8773930
|
HR-TB
|
lineage4.8
|
None
|
SRR10869197
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4810954
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR22251883
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR2515475
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR1013565
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR1048845
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1034639
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13285251
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR8651572
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4811380
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553076
|
HR-TB
|
lineage4.3.3
|
de
|
ERR6358839
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR4796821
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SAMN02360560
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR29385317
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992753
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13288935
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11252638
|
HR-TB
|
lineage4.1.2
|
None
|
SRR28045427
|
HR-TB
|
lineage4.3.3
|
None
|
ERR11775534
|
HR-TB
|
lineage4.3.4.2
|
None
|
SRR8651578
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
ERR13286205
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29385510
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737784
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR29093183
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9029384
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4827827
|
HR-TB
|
lineage4
|
None
|
ERR2512585
|
HR-TB
|
lineage4.2.2.2
|
gb
|
SRR6824303
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR11488849
|
MDR-TB
|
lineage4.1.2
|
None
|
SRR27450042
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29093214
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29056277
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10748144
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7162973
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR752233
|
HR-TB
|
lineage4.5
|
th
|
SRR9613555
|
HR-TB
|
lineage4.8
|
None
|
ERR13284983
|
MDR-TB
|
lineage1.1.1.1
|
None
|
ERR2516485
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage4.3.4.2
|
pe
|
ERR3132106
|
MDR-TB
|
lineage4.4
|
None
|
ERR4808942
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR12420743
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR3086366
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1873400
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR15723151
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16103889
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9807014
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR6824404
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29096406
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR8237332
|
HR-TB
|
lineage2.2.1
|
np
|
ERR11081500
|
HR-TB
|
lineage4.3.3
|
None
|
ERR7737724
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR4822206
|
HR-TB
|
lineage4.8
|
None
|
ERR11050798
|
HR-TB
|
lineage4.2.2.2
|
None
|
SRR1723510
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR1723573
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748491
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4813749
|
HR-TB
|
lineage4.1.2
|
br
|
ERR11050190
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR28393387
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28393315
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13260860
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4195513
|
HR-TB
|
lineage4.8
|
None
|
ERR4810471
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
ERR4830394
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR4814335
|
MDR-TB
|
lineage4.2.1
|
gb
|
ERR11081374
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025443
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.1.1.3
|
None
|
SRR1723659
|
MDR-TB
|
lineage2.2.1;lineage4.9
|
None
|
ERR9992974
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16157097
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1013545
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16370509
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6061380
|
HR-TB
|
lineage4.8
|
ca
|
ERR9120109
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9806973
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR11662504
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552700
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR553315
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9807002
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8025435
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10748522
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9993264
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR671737
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR3132140
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4831847
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR553094
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13285101
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR551467_ERR551466
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1013646
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR1013647
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR10869134
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4827675
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4796618
|
MDR-TB
|
lineage4.2.2.2
|
in
|
ERR4423565
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29051225
|
HR-TB
|
lineage4.3.3
|
None
|
SRR6824581
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
cn
|
ERR552792
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR6362771
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR11662418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796595
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR2515993
|
HR-TB
|
lineage4.1.2.1
|
za
|
SRR23340137
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR21031743
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2497881
|
MDR-TB
|
lineage4.9
|
None
|
ERR2516975
|
MDR-TB
|
lineage4.1.2.1
|
gb
|
ERR551499
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR502506
|
MDR-TB
|
lineage6.2.1
|
gh
|
ERR10112837
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10112840
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911610
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR551828_ERR551829
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806985
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR6824451
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR10869161
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4827972
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869214
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8975429
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR2100869
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR16156756
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR031481
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR9125421
|
HR-TB
|
lineage1.2.2.1
|
None
|
ERR1035180
|
HR-TB
|
lineage4.3.4.2
|
pt
|
ERR11081761
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29385414
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR5866331
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21277243
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6930905
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869239
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR2653192
|
HR-TB
|
lineage4.3.2
|
None
|
ERR1213896
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR8975014
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11043581
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR7911585
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR7911590
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4800572
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR6930892
|
Pre-XDR-TB
|
La1.8;lineage4.3.2
|
None
|
SRR29231338
|
Pre-XDR-TB
|
lineage4.1.1.3;lineage4.1.2
|
None
|
SRR1003104
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5918040
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR234256
|
HR-TB
|
lineage2.2.1.1
|
us
|
SRR29093106
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29093345
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911143
|
MDR-TB
|
lineage4.1.2.1
|
vn
|
ERR11067541
|
HR-TB
|
lineage4.3.3
|
None
|
SRR15014627
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680027
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9806966
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR2024947
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29051051
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28393952
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28646080
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR553290
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4797234
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR15316258
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15316264
|
MDR-TB
|
lineage4.5
|
None
|
ERR1873448
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4811336
|
MDR-TB
|
lineage2.2.2
|
cn
|
ERR10680044
|
MDR-TB
|
lineage6.2.2
|
None
|
ERR2041708
|
MDR-TB
|
lineage4
|
rs
|
ERR4827473
|
HR-TB
|
lineage4.2.1
|
None
|
ERR9030510
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2512878
|
MDR-TB
|
lineage4.2.1
|
gb
|
ERR8975456
|
HR-TB
|
lineage4.8
|
None
|
ERR553095
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4812160
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR4831809
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR23691416
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866284
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR7516424
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824337
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
SRR6824660
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR13583437
|
HR-TB
|
lineage4.3.3
|
None
|
ERR867534
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28394125
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9806869
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR551828
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975742
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR12420594
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR2516694
|
MDR-TB
|
lineage4.2.1
|
nl
|
ERR4011940
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR18593210
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4830650
|
Pre-XDR-TB
|
lineage4.2.1
|
tm
|
ERR5866330
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866329
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866429
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093248
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR28044988
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR9992989
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR11444106
|
HR-TB
|
lineage4.1.1.3
|
None
|
SRR2024988
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR28394207
|
MDR-TB
|
lineage4
|
None
|
SRR28351361
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5918039
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR6362259
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29772763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23340054
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR23340094
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9993209
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1013562
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR13449606
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9807010
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10112861
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8025628
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2516338
|
MDR-TB
|
lineage6.3.1
|
None
|
ERR4812740
|
MDR-TB
|
lineage4.1.4
|
pe
|
ERR7801215
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR13285082
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR23340150
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4830989
|
Pre-XDR-TB
|
lineage4.3.3
|
np
|
ERR550874
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR552303
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR7911597
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR9119259
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1166162
|
MDR-TB
|
lineage4.7
|
ro
|
SRR1723548
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR11043473
|
HR-TB
|
lineage4.3.3
|
None
|
SRR1049043
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR9806910
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR23339959
|
MDR-TB
|
lineage4.8
|
None
|
SRR10869164
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4820776
|
Pre-XDR-TB
|
lineage4.8
|
gb
|
ERR13292094
|
HR-TB
|
lineage2.2.1
|
None
|
SRR16115868
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR16156199
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR19276624
|
MDR-TB
|
lineage4.7
|
None
|
ERR2516316
|
MDR-TB
|
lineage6.3.1
|
be
|
ERR13285073
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7341680
|
HR-TB
|
lineage4.1.2.1
|
ro
|
ERR10112843
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2497900
|
MDR-TB
|
lineage4.9
|
None
|
SRR28868509
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29093720
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13289331
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4872127
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10748381
|
MDR-TB
|
lineage3;lineage4.1.1.3
|
None
|
ERR1199137
|
MDR-TB
|
lineage4.6.1.2
|
ug
|
SRR22424940
|
HR-TB
|
lineage4.1.1.1
|
None
|
ERR4797275
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR8025592
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4808876
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR18715352
|
HR-TB
|
lineage4.3.3;lineage4.8
|
None
|
ERR7911684
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR1034641
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13232609
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR867549
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9907745
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831561
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9806899
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9119485
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2512440
|
MDR-TB
|
lineage4.2.1
|
gb
|
ERR3639723
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11081025
|
MDR-TB
|
lineage6.3.1
|
None
|
ERR7821230
|
HR-TB
|
lineage4.1.2
|
None
|
ERR11488628
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810696
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10679999
|
MDR-TB
|
lineage4.1
|
None
|
ERR10112887
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR158589
|
HR-TB
|
lineage2.2.1
|
ru
|
ERR867524
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4797017
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
SRR19320495
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR9993105
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR21277277
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2653026
|
HR-TB
|
lineage4.8
|
None
|
SRR25207285
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2707150
|
MDR-TB
|
lineage4.9
|
cd
|
SRR6398049
|
HR-TB
|
lineage4.2.2
|
ca
|
ERR11488685
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4821230
|
MDR-TB
|
lineage4.2.1
|
gb
|
SRR29093749
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR3148185
|
MDR-TB
|
lineage4.1.2.1
|
mx
|
SRR29093339
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR786503
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11567801
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR11068021
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR8975781
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10748150
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10748485
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4813757
|
MDR-TB
|
lineage4.8
|
br
|
SRR7070296
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR24799226
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2497907
|
HR-TB
|
lineage4.9
|
None
|
ERR3132251
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4796649
|
MDR-TB
|
lineage4.1.2.1
|
in
|
SRR25515377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488879
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR126642
|
HR-TB
|
lineage4.1.1.3
|
mw
|
SAMN03246286
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR10680082
|
MDR-TB
|
lineage6.2.2
|
None
|
ERR10680147
|
MDR-TB
|
lineage6.2.2
|
None
|
ERR9993218
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11798650
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11043578
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29096311
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4011976
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9120110
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29096345
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4828009
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11043721
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1723574
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993216
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29055594
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911637
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR1873441
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR26399496
|
HR-TB
|
lineage2.2.1.1;lineage4.4.1.1
|
None
|
ERR7162974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1049042
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR9907735
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR029823
|
HR-TB
|
lineage4.2.2.2
|
None
|
SRR1723993
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR13289296
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR12420790
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9121531
|
HR-TB
|
lineage4.8
|
None
|
ERR1873391
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR23340165
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR23340141
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR069929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15316367
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869227
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR12708383
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR25515417
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7801214
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SAMN03246299
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR551466
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723550
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23340062
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11043129
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4798189
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR5866286
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4796985
|
MDR-TB
|
lineage4.2.2.2
|
in
|
SRR21277260
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806880
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR6397396
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR6824331
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR4830382
|
HR-TB
|
lineage2.2.1
|
vn
|
ERR7911704
|
MDR-TB
|
lineage4.1.1.3
|
za
|
SRR8651581
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR15316480
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13292397
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR751650
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR10680048
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SAMN02360626
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR1034911
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
pt
|
SRR6824447
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR16156239
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR6152981
|
HR-TB
|
lineage2.2.1
|
ca
|
ERR2515568
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR550873
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR16156730
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911601
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR16156240
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR6824456
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR16156747
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR21728716
|
HR-TB
|
lineage4.4.2
|
None
|
ERR2497906
|
MDR-TB
|
lineage4.9
|
None
|
SAMEA2534221
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR29093458
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR3273089
|
MDR-TB
|
lineage4.5
|
None
|
SRR671819
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR9119286
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10680000
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR1723551
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043265
|
MDR-TB
|
lineage4.8
|
None
|
ERR10610155
|
MDR-TB
|
lineage4.9
|
None
|
SRR21747060
|
MDR-TB
|
lineage1.2.1.2
|
None
|
SRR23339985
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9806953
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29231846
|
MDR-TB
|
lineage4.9
|
None
|
SRR5709759
|
Pre-XDR-TB
|
lineage2.2.2
|
th
|
ERR7362011
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16156241
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR23340058
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR21031697
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12420343
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR3273104
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29093245
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR26056455
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13284307
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806944
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR6362393
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR216923
|
HR-TB
|
lineage4.8
|
mw
|
ERR13267526
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4830039
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10748318
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR10748320
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11252428
|
HR-TB
|
lineage4.3.4.2
|
None
|
ERR2179653
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR5866428
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4812954
|
HR-TB
|
lineage4.4.1
|
pe
|
ERR8975785
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR023475
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR5153604
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR4796657
|
MDR-TB
|
lineage4.8
|
in
|
SRR5149238
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR070017
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515546
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR10680018
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR1048861
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4011941
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4827541
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6152960
|
HR-TB
|
lineage2.2.2
|
ca
|
SAMEA2533987
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR17657949
|
HR-TB
|
lineage1.1.2;lineage4.3.4.2.1
|
None
|
ERR9806952
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29055798
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29772584
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11080838
|
HR-TB
|
lineage4.3.3
|
None
|
SRR21576587
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR11082702
|
MDR-TB
|
lineage4.8
|
None
|
SRR24256011
|
HR-TB
|
lineage4.8
|
None
|
SRR27069425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11775525
|
HR-TB
|
lineage4.3.4.2
|
None
|
ERR551467
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5067498
|
HR-TB
|
lineage1.1.1.1
|
vn
|
ERR7801216
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR1013566
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR3287780
|
HR-TB
|
lineage4.8
|
pe
|
ERR4813771
|
HR-TB
|
lineage4.8
|
None
|
SRR23340155
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9992998
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR551501_ERR551500_ERR551499
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552196
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488863
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR8773591
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112890
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13261138
|
Pre-XDR-TB
|
lineage4.8
|
None
|
DRR130060
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680108
|
MDR-TB
|
lineage6.2.3
|
None
|
ERR9806925
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR23340041
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4799311
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
ERR9993065
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR25207138
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993114
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2515337
|
XDR-TB
|
lineage4.1.1.3
|
za
|
ERR2516532
|
MDR-TB
|
lineage4.1.1
|
pe
|
ERR439973
|
MDR-TB
|
lineage5.1.4
|
None
|
ERR10748353
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR386971
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR20969848
|
HR-TB
|
lineage2.2.1
|
None
|
ERR551829
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987307
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4553881
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR23340143
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR9119916
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR6358865
|
HR-TB
|
lineage4.6.1.1
|
None
|
SRR10869203
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR11662250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911628
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4872255
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR8025664
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR12420491
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR1034655
|
MDR-TB
|
lineage4
|
bg
|
ERR9992746
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9807012
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16156716
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9993219
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR10869213
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR671780
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR29055939
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR11488672
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207096
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR19276626
|
HR-TB
|
lineage4.3.3
|
None
|
ERR9993230
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11082809
|
MDR-TB
|
lineage1.1.1.1
|
None
|
ERR4813977
|
MDR-TB
|
lineage4.8
|
br
|
SRR5074135
|
HR-TB
|
lineage1.1.1.1
|
vn
|
SRR13423580
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081167
|
HR-TB
|
lineage4.3.4.1
|
None
|
ERR1873546
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR7516425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830044
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7068967
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29096883
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR12544194
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13267525
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR7361986
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1013546
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8773589
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112876
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR3148182
|
MDR-TB
|
lineage2.2.1
|
mx
|
ERR2124097
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR23340136
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR22175223
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR6824329
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR550827
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4827588
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112853
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9806876
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9119647
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13288959
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29093427
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR1873462
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR22461590
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10748424
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9993009
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR21887670
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6362206
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR1034990
|
MDR-TB
|
lineage4.1.1.3
|
za
|
SRR10869158
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11050191
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR12416833
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011938
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR1873554
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR23340157
|
MDR-TB
|
lineage4.2.1
|
None
|
DRR473831
|
HR-TB
|
lineage4.2.2
|
None
|
ERR2099777
|
MDR-TB
|
lineage4.1.2.1
|
es
|
SRR16156738
|
MDR-TB
|
lineage2.2.1.1;lineage4.1.1.3
|
None
|
ERR9119693
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR1723534
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6930925
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR28393992
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9806971
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9119915
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR6930934
|
Pre-XDR-TB
|
lineage4.1
|
None
|
ERR2653227
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR3290821
|
MDR-TB
|
lineage4.5
|
None
|
SRR7592360
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR13261338
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR10869284
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR22251463
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
ERR550654
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR551501
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3273147
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR7911675
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4799178
|
MDR-TB
|
lineage4.8
|
in
|
SAMN02360552
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02360562
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR11252552
|
HR-TB
|
lineage4.1.2
|
None
|
ERR1035037
|
MDR-TB
|
lineage4.1.1.3
|
za
|
SRR27069435
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748448
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9806931
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR6356974
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13191623
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29056139
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR16156846
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR11567799
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR23340139
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR26400044
|
HR-TB
|
lineage2.2.1
|
None
|
ERR502937
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR987786
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR2516717
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR1034647
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR5709881
|
MDR-TB
|
lineage2.2.1
|
th
|
ERR987748
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR1048865
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR23340007
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR8758896
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4831528
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4831558
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2515793
|
HR-TB
|
lineage2.2.1
|
za
|
SRR1048866
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR5866285
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR15316288
|
HR-TB
|
lineage2.2.1
|
None
|
SRR16156719
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11081339
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR8025711
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29056327
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8025573
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16058313
|
HR-TB
|
lineage1.2.2.1
|
None
|
SRR29017642
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR8025703
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR29056301
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR13261495
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR6152876
|
HR-TB
|
lineage1.2.1.2.1
|
ca
|
ERR9992839
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR553244
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR552648
|
HR-TB
|
lineage4.3.3
|
None
|
ERR7910849
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR7737796
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR3103514
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR8773932
|
HR-TB
|
lineage4.8
|
None
|
ERR1873446
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR23340158
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2515133
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR9119533
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9993083
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16156859
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16156282
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR11488629
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576708
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056305
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR26112569
|
HR-TB
|
lineage1.2.1.2.1
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10748158
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR3273103
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4799656
|
MDR-TB
|
lineage4.2.2.2
|
in
|
ERR867541
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29772471
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25207027
|
MDR-TB
|
lineage4.5
|
None
|
SRR28393974
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11775865
|
HR-TB
|
lineage4.6.1.1
|
None
|
ERR751558
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
SRR069952
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011939
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR1048844
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11488392
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR9806866
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9807004
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR16156243
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4813587
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6855833
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR8975422
|
HR-TB
|
lineage4.3.4.2
|
None
|
SRR29385253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082720
|
HR-TB
|
lineage4.8
|
None
|
SRR29056112
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR108420
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR9992751
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9993088
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR229974
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR18911986
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR23340034
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR8975740
|
XDR-TB
|
lineage4.1.1.3
|
None
|
ERR7911677
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4423566
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR718297
|
HR-TB
|
lineage2.2.1
|
th
|
SRR10869234
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4809001
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR8025662
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
DRR474005
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7069713
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4797823
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR13232654
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797028
|
Pre-XDR-TB
|
lineage1.1.2
|
in
|
ERR4553980
|
HR-TB
|
lineage2.2.1
|
None
|
ERR1035061
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
ERR4798329
|
MDR-TB
|
lineage4.2.2.2
|
in
|
ERR10748165
|
XDR-TB
|
lineage4.1.1.3
|
None
|
SRR15316250
|
HR-TB
|
lineage4.4.2
|
None
|
ERR550826
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9993031
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2510394
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873540
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR1013561
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11081059
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11252396
|
HR-TB
|
lineage4.3.4.2
|
None
|
SRR18003010
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR9806962
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR9806939
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR3085295
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025490
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR8025508
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR23340142
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR12420751
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29093974
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR21031691
|
MDR-TB
|
lineage2.2.1.1
|
None
|