Run ID: ERR3275548
Sample name:
Date: 21-10-2023 05:34:38
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9422 | c.2121C>T | synonymous_variant | 1.0 |
gyrA | 9596 | c.2295G>T | synonymous_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762917 | c.-453C>G | upstream_gene_variant | 0.13 |
rpoC | 762923 | c.-447C>G | upstream_gene_variant | 0.12 |
rpoB | 762925 | p.Thr1040Ile | missense_variant | 0.12 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.12 |
rpoB | 762939 | p.Met1045Leu | missense_variant | 0.12 |
rpoB | 762942 | p.Ile1046Val | missense_variant | 0.12 |
rpoC | 762965 | c.-405T>C | upstream_gene_variant | 0.15 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764181 | p.Asp271Gly | missense_variant | 1.0 |
rpoC | 764410 | c.1041G>C | synonymous_variant | 0.18 |
rpoC | 764428 | c.1059G>C | synonymous_variant | 0.22 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.24 |
rpoC | 764435 | c.1066A>C | synonymous_variant | 0.24 |
rpoC | 764446 | p.Asp359Glu | missense_variant | 0.24 |
rpoC | 764450 | p.Gly361Arg | missense_variant | 0.24 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.27 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 0.27 |
rpoC | 764468 | p.Val367Ile | missense_variant | 0.29 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 0.29 |
rpoC | 764611 | c.1242G>C | synonymous_variant | 0.23 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.27 |
rpoC | 764650 | c.1281G>C | synonymous_variant | 0.27 |
rpoC | 764672 | p.Gln435Glu | missense_variant | 0.27 |
rpoC | 764677 | c.1308C>G | synonymous_variant | 0.26 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.22 |
rpoC | 764705 | p.Leu446Lys | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472266 | n.421C>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472277 | n.432C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476336 | n.2679C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476356 | n.2699C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476357 | n.2700T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476384 | n.2727G>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476428 | n.2771C>A | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476443 | n.2786G>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476455 | n.2798C>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170769 | c.-157C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 0.98 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244454 | p.Ala408Ser | missense_variant | 0.95 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |