Run ID: ERR4817275
Sample name:
Date: 01-04-2023 14:54:10
Number of reads: 1291963
Percentage reads mapped: 92.5
Strain: lineage4.2.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.7 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491316 | c.534C>G | synonymous_variant | 0.11 |
mshA | 576077 | c.730C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472560 | n.715G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.64 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472954 | n.1109T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472992 | n.1147A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473005 | n.1160C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474252 | n.595T>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1474275 | n.618T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3066276 | c.-85G>A | upstream_gene_variant | 1.0 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612469 | c.648A>G | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408464 | c.-262G>T | upstream_gene_variant | 1.0 |