Run ID: ERR4818465
Sample name:
Date: 01-04-2023 15:34:35
Number of reads: 7768727
Percentage reads mapped: 94.73
Strain: lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.82 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472108 | n.263C>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472130 | n.285G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.83 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.89 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.9 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.84 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474734 | n.1077G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475518 | n.1861A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475521 | n.1864T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475526 | n.1869C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475529 | n.1872A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475532 | n.1875A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475538 | n.1881T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475548 | n.1891C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475549 | n.1892T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.19 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102198 | p.Ala282Val | missense_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169965 | c.648C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473820 | c.-187C>A | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4240009 | c.147G>A | synonymous_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |