Run ID: ERR4830701
Sample name:
Date: 01-04-2023 20:24:00
Number of reads: 2509182
Percentage reads mapped: 94.26
Strain: lineage4;lineage3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.92 |
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.08 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472362 | n.517C>T | non_coding_transcript_exon_variant | 0.76 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.97 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.29 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 0.94 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.95 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1417353 | c.-6C>G | upstream_gene_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472279 | n.434T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1473640 | n.-17delT | upstream_gene_variant | 0.12 |
rrl | 1474690 | n.1033C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474709 | n.1053_1056delTGGT | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474717 | n.1060_1061insGCCAG | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474752 | n.1096delA | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103202 | c.-160C>T | upstream_gene_variant | 0.98 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.96 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.95 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 0.16 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 0.96 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 0.92 |
ribD | 2986852 | p.Gly5Asp | missense_variant | 0.93 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3840533 | c.888G>C | synonymous_variant | 0.93 |
embC | 4242075 | p.Arg738Gln | missense_variant | 0.98 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338471 | p.Arg17Ser | missense_variant | 0.96 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.93 |