Run ID: ERR9787250
Sample name:
Date: 02-04-2023 13:06:20
Number of reads: 951488
Percentage reads mapped: 99.51
Strain: lineage6;lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 0.24 |
lineage6 | West-Africa 2 | AFRI_1 | RD702 | 0.78 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
embC | 4240781 | p.Ala307Thr | missense_variant | 0.6 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6446 | p.Ala403Ser | missense_variant | 0.89 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.76 |
gyrA | 8493 | p.Leu398Phe | missense_variant | 0.64 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.73 |
gyrA | 9257 | p.Asn652Lys | missense_variant | 0.79 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.79 |
fgd1 | 491668 | p.Lys296Glu | missense_variant | 0.74 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.78 |
rpoB | 760855 | p.Thr350Ile | missense_variant | 0.79 |
rpoB | 760969 | p.Ser388Leu | missense_variant | 0.8 |
rpoB | 761723 | p.Glu639Asp | missense_variant | 0.82 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.87 |
rpoC | 766231 | c.2862T>C | synonymous_variant | 0.76 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.83 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 0.8 |
Rv1258c | 1406685 | p.Val219Ala | missense_variant | 0.76 |
embR | 1416633 | p.Leu239Val | missense_variant | 0.74 |
atpE | 1461251 | c.207G>T | synonymous_variant | 0.8 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.28 |
inhA | 1674434 | p.Val78Ala | missense_variant | 0.81 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.73 |
katG | 2155503 | c.609C>T | synonymous_variant | 0.76 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.84 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 0.83 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 0.89 |
Rv2752c | 3067171 | c.-980C>T | upstream_gene_variant | 0.72 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 0.73 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.7 |
ald | 3087084 | c.266delA | frameshift_variant | 0.72 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.82 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 0.8 |
Rv3236c | 3612143 | p.Arg325His | missense_variant | 0.76 |
alr | 3840764 | c.657G>C | synonymous_variant | 0.22 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.74 |
embC | 4241843 | p.Leu661Ile | missense_variant | 0.66 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 0.84 |
embA | 4244379 | p.Pro383Ser | missense_variant | 0.73 |
embB | 4246864 | c.351C>T | synonymous_variant | 0.72 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.71 |
embB | 4248645 | p.Ala711Asp | missense_variant | 0.23 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 0.75 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 0.79 |
aftB | 4269522 | c.-686C>T | upstream_gene_variant | 0.83 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 0.7 |
ethA | 4326465 | p.Ile337Val | missense_variant | 0.85 |
whiB6 | 4338427 | p.Gly32Ala | missense_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.94 |
gid | 4408034 | p.Glu57Lys | missense_variant | 0.79 |