Run ID: SRR1173045
Sample name:
Date: 03-04-2023 03:15:29
Number of reads: 1394333
Percentage reads mapped: 77.56
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8337 | p.Leu346Val | missense_variant | 0.97 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491521 | p.Arg247Trp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 765202 | c.1833C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472243 | n.398G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472253 | n.408G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472714 | n.869A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472716 | n.871C>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472982 | n.1137G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472996 | n.1151T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473201 | n.1356A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473202 | n.1357C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2519187 | p.Thr358Met | missense_variant | 0.11 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |