Run ID: SRR18911982
Sample name:
Date: 03-04-2023 20:47:39
Number of reads: 2067474
Percentage reads mapped: 98.43
Strain: lineage4.4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.11 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762914 | c.-456C>T | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474476 | n.819C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474488 | n.831G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474496 | n.839C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474507 | n.850G>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169265 | p.Ser450Arg | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3065715 | c.477T>C | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475052 | p.Asn349Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 1.0 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 1.0 |
ethA | 4328200 | c.-727C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |