Run ID: SRR23311021
Sample name:
Date: 14-03-2023 07:11:07
Number of reads: 3729122
Percentage reads mapped: 99.51
Strain: lineage4.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781822 | p.Lys88Arg | missense_variant | 1.0 | streptomycin |
fabG1 | 1673425 | c.-15C>T | upstream_gene_variant | 0.98 | isoniazid, ethionamide |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288719 | p.Met175Val | missense_variant | 0.99 | pyrazinamide |
eis | 2715344 | c.-12C>T | upstream_gene_variant | 0.99 | kanamycin |
embB | 4247429 | p.Met306Val | missense_variant | 0.99 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.17 |
fgd1 | 491247 | c.465C>T | synonymous_variant | 0.99 |
ccsA | 619969 | p.Val27Ile | missense_variant | 0.98 |
rpoC | 764923 | p.Glu518Asp | missense_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777883 | p.Gly200Arg | missense_variant | 0.16 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.27 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.15 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.15 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.29 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 0.99 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.71 |
fprA | 3473996 | c.-10_-9insA | upstream_gene_variant | 0.99 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.33 |
rpoA | 3878591 | c.-84C>G | upstream_gene_variant | 0.25 |
rpoA | 3878597 | c.-90G>C | upstream_gene_variant | 0.22 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.3 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.47 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.27 |
embB | 4247020 | c.507C>G | synonymous_variant | 0.19 |
embB | 4249594 | c.3081G>A | synonymous_variant | 1.0 |
ethA | 4326632 | p.His281Pro | missense_variant | 0.99 |
ethA | 4328376 | c.-903G>C | upstream_gene_variant | 0.98 |