TB-Profiler result

Run: SRR5485513

Summary

Run ID: SRR5485513

Sample name:

Date: 18-08-2022 08:33:24

Number of reads: 82126

Percentage reads mapped: 94.98

Strain:

Drug-resistance: RR-TB


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.5 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.23 kanamycin, capreomycin, aminoglycosides, amikacin
pncA 2288806 p.Ala146Thr missense_variant 0.18 pyrazinamide
pncA 2289223 p.Val7Ile missense_variant 0.2 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6693 p.Ile485Thr missense_variant 0.17
gyrA 7596 p.Met99Leu missense_variant 0.17
gyrA 7612 p.Ser104Leu missense_variant 0.15
rpoB 761144 c.1338G>A synonymous_variant 0.14
rpoB 761162 c.1356G>A synonymous_variant 0.14
rpsL 781705 p.Leu49Pro missense_variant 0.2
rpsL 781725 p.Lys56Glu missense_variant 0.17
rpsL 781747 p.Val63Ala missense_variant 0.17
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.42
rrs 1472562 n.717C>G non_coding_transcript_exon_variant 0.18
rrs 1472707 n.862A>G non_coding_transcript_exon_variant 0.14
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.5
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.5
rrs 1473270 n.1425G>A non_coding_transcript_exon_variant 0.5
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.5
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.5
rrs 1473305 n.1460G>T non_coding_transcript_exon_variant 0.5
rrs 1473316 n.1471C>T non_coding_transcript_exon_variant 0.24
pncA 2289179 c.63A>G synonymous_variant 0.2
pncA 2289209 c.33C>T synonymous_variant 0.2
embB 4247616 p.Glu368Gly missense_variant 0.17