Run ID: SRR5485513
Sample name:
Date: 18-08-2022 08:33:24
Number of reads: 82126
Percentage reads mapped: 94.98
Strain:
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rrs | 1473247 | n.1402C>A | non_coding_transcript_exon_variant | 0.5 | kanamycin, capreomycin, aminoglycosides, amikacin |
rrs | 1473329 | n.1484G>T | non_coding_transcript_exon_variant | 0.23 | kanamycin, capreomycin, aminoglycosides, amikacin |
pncA | 2288806 | p.Ala146Thr | missense_variant | 0.18 | pyrazinamide |
pncA | 2289223 | p.Val7Ile | missense_variant | 0.2 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6693 | p.Ile485Thr | missense_variant | 0.17 |
gyrA | 7596 | p.Met99Leu | missense_variant | 0.17 |
gyrA | 7612 | p.Ser104Leu | missense_variant | 0.15 |
rpoB | 761144 | c.1338G>A | synonymous_variant | 0.14 |
rpoB | 761162 | c.1356G>A | synonymous_variant | 0.14 |
rpsL | 781705 | p.Leu49Pro | missense_variant | 0.2 |
rpsL | 781725 | p.Lys56Glu | missense_variant | 0.17 |
rpsL | 781747 | p.Val63Ala | missense_variant | 0.17 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472562 | n.717C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473270 | n.1425G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473305 | n.1460G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.24 |
pncA | 2289179 | c.63A>G | synonymous_variant | 0.2 |
pncA | 2289209 | c.33C>T | synonymous_variant | 0.2 |
embB | 4247616 | p.Glu368Gly | missense_variant | 0.17 |