Run ID: SRR6824683
Sample name:
Date: 04-04-2023 16:57:29
Number of reads: 10867070
Percentage reads mapped: 99.03
Strain: lineage4.4.2
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.2 | Euro-American | T1;T2 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 760314 | p.Val170Phe | missense_variant | 1.0 | rifampicin |
pncA | 2289054 | p.Asp63Ala | missense_variant | 0.75 | pyrazinamide |
ahpC | 2726136 | c.-57C>T | upstream_gene_variant | 1.0 | isoniazid |
embB | 4247429 | p.Met306Val | missense_variant | 0.83 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765926 | p.Thr853Ala | missense_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473097 | n.1252G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473122 | n.1277T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473147 | n.1302G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473164 | n.1319C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.1 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155629 | p.Trp161Cys | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288793 | p.Gly150Asp | missense_variant | 1.0 |
pncA | 2288797 | p.Asn149Asp | missense_variant | 0.15 |
Rv2752c | 3066099 | p.Met31Ile | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448348 | c.-156G>A | upstream_gene_variant | 1.0 |
Rv3083 | 3449073 | c.571dupA | frameshift_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246508 | c.-6G>A | upstream_gene_variant | 1.0 |
embB | 4247249 | p.Gly246Arg | missense_variant | 1.0 |
aftB | 4268928 | c.-92C>T | upstream_gene_variant | 1.0 |
aftB | 4269375 | c.-539G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |