Run ID: SRR6832214
Sample name:
Date: 04-04-2023 17:17:54
Number of reads: 2677041
Percentage reads mapped: 95.18
Strain: lineage4.2.1.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
lineage4.2.1.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.11 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777451 | p.Val344Leu | missense_variant | 0.93 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472728 | n.883G>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472754 | n.909G>A | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476429 | n.2772A>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103023 | p.Pro7Leu | missense_variant | 1.0 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 0.94 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338596 | c.-76delA | upstream_gene_variant | 1.0 |
gid | 4408213 | c.-11C>T | upstream_gene_variant | 1.0 |