Rv0001 - c.225G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
21 Sensitive
0 RR-TB
18 HR-TB
18 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 2 |
| lineage2.2.1 | 31 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 3 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage4.1.1.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage1.1.2 | 1 |
| lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 64 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR228153 | Sensitive | lineage3 | None | ERR13260234 | MDR-TB | lineage2.2.1 | None | SRR28858706 | MDR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR7910885 | MDR-TB | lineage2.2.1 | pe | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6824424 | Sensitive | lineage2.2.1 | cn | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | DRR185120 | HR-TB | lineage2.2.1 | vn | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR16370473 | MDR-TB | lineage2.2.1 | None | SRR29126779 | Sensitive | lineage4.4.1.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2510804 | Other | lineage2.2.1 | None | SRR14520007 | Sensitive | lineage2.2.1 | None | ERR2510756 | Sensitive | lineage2.2.1 | None | ERR13261603 | MDR-TB | lineage2.2.1 | None | ERR8976043 | HR-TB | lineage2.2 | None | ERR4829207 | Sensitive | lineage2.2.1 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR4813312 | MDR-TB | lineage2.2.1 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4813240 | Sensitive | lineage2.2.1 | pe | ERR2184419 | Sensitive | lineage2.2.1 | None | ERR1034801 | Sensitive | lineage2.2.1 | pe | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR6879049 | Sensitive | lineage2.2.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR9029920 | Sensitive | lineage2.2.1 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | ERR4812285 | Sensitive | lineage2.2.1;lineage4.1.2.1 | pe | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR28393595 | MDR-TB | lineage2.2.1 | None | SRR7131099 | Sensitive | lineage2.2.1 | None | ERR751471 | Sensitive | lineage2.2.1 | pe | ERR4812967 | MDR-TB | lineage2.2.1 | pe | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR2100512 | Sensitive | lineage3 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR27450183 | Sensitive | lineage2.2.1 | None | ERR4829250 | Sensitive | lineage2.2.1 | None | SRR29230918 | Sensitive | lineage1.1.2 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SAMEA104362260 | Sensitive | lineage2.2.1 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR10808597 | Sensitive | lineage2.2.1 | None | SRR29126645 | Other | lineage2.2.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR13261576 | MDR-TB | lineage2.2.1 | None | ERR6866561 | Sensitive | lineage2.2.1 | None |
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