Rv0005 - c.1734G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
52 Sensitive
0 RR-TB
6 HR-TB
28 MDR-TB
5 Pre-XDR-TB
1 XDR-TB
5 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 81 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage4.3.3 | 3 |
| lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| 1 | |
| La2;lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 97 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR22251731 | Sensitive | lineage2.2.1 | None | DRR034535 | Sensitive | lineage2.2.1 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1048973 | Sensitive | lineage2.2.1 | None | ERR13194020 | Sensitive | lineage2.2.1 | None | DRR034400 | Sensitive | lineage2.2.1 | None | SRR29093381 | MDR-TB | lineage2.2.1 | None | ERR4819789 | Sensitive | lineage2.2.1 | None | ERR11138615 | MDR-TB | lineage2.2.1 | None | ERR13296462 | Sensitive | lineage2.2.1 | None | SRR1202608 | Sensitive | lineage2.2.1 | None | SRR15315834 | MDR-TB | lineage2.2.1 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR29093131 | MDR-TB | lineage2.2.1 | None | ERR13195057 | MDR-TB | lineage2.2.1 | None | SRR30182786 | Sensitive | lineage2.2.1 | None | ERR13235264 | MDR-TB | lineage2.2.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR1202511 | Sensitive | lineage2.2.1 | None | SRR1202588 | Sensitive | lineage2.2.1 | None | ERR13265214 | Sensitive | lineage2.2.1 | None | SRR1202601 | Sensitive | lineage2.2.1 | None | SRR1202635 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR28467065 | HR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4811888 | Other | lineage4.3.3 | pe | DRR034399 | Sensitive | lineage2.2.1 | None | ERR13245253 | XDR-TB | lineage2.2.1 | None | ERR13194032 | MDR-TB | lineage2.2.1 | None | ERR13230687 | Sensitive | lineage2.2.1 | None | SRR1208251 | Sensitive | lineage2.2.1 | None | ERR8665994 | Other | lineage4.9 | None | DRR130221 | Sensitive | lineage2.2.1 | None | ERR6866851 | Other | lineage4.3.3 | None | SRR1013587 | Sensitive | lineage2.2.1 | None | SRR1208279 | Sensitive | lineage2.2.1 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093362 | MDR-TB | lineage2.2.1 | None | SRR1048972 | Sensitive | lineage2.2.1 | None | SRR1208285 | Sensitive | lineage2.2.1 | None | DRR188996 | Sensitive | lineage2.2.1 | None | ERR13231295 | Sensitive | lineage2.2.1 | None | SRR17657936 | MDR-TB | lineage2.2.1 | None | ERR13193995 | Sensitive | lineage2.2.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093903 | MDR-TB | lineage2.2.1 | None | SRR1208218 | Sensitive | lineage2.2.1 | None | SRR21727753 | Sensitive | lineage2.2.1 | None | SRR1208197 | Sensitive | lineage2.2.1 | None | ERR13265418 | Sensitive | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013588 | Sensitive | lineage2.2.1 | None | ERR3132288 | MDR-TB | lineage2.2.1 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR13194147 | Sensitive | lineage2.2.1 | None | ERR13230586 | Sensitive | lineage2.2.1 | None | SRR1208389 | Sensitive | lineage2.2.1 | None | ERR11138628 | MDR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR29053368 | Sensitive | lineage2.2.1 | None | SRR29093371 | MDR-TB | lineage2.2.1 | None | SRR1208349 | Sensitive | lineage2.2.1 | None | ERR13195579 | Sensitive | lineage2.2.1 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | SRR1208311 | Sensitive | lineage2.2.1 | None | SRR1208258 | Sensitive | lineage2.2.1 | None | SRR1144757 | Pre-XDR-TB | lineage2.2.1 | None | SRR1640750 | Other | None | SRR1202646 | Sensitive | lineage2.2.1 | None | SRR29093373 | MDR-TB | lineage2.2.1 | None | SRR29093948 | MDR-TB | lineage2.2.1 | None | SRR1020015 | Sensitive | lineage2.2.1 | None | SRR19320503 | Sensitive | lineage2.2.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR28467042 | MDR-TB | lineage2.2.1 | None | SRR1208307 | Sensitive | lineage2.2.1 | None | SRR1208333 | Sensitive | lineage2.2.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29093382 | MDR-TB | lineage2.2.1 | None | ERR13266899 | MDR-TB | lineage2.2.1 | None | SRR21733049 | Sensitive | lineage2.2.1 | None | SRR1208401 | Sensitive | lineage2.2.1 | None | ERR13193994 | Other | lineage2.2.1 | None | SRR28467052 | HR-TB | lineage2.2.1 | None | SRR28467051 | MDR-TB | lineage2.2.1 | None | ERR13243570 | MDR-TB | lineage2.2.1 | None | SRR1208177 | Sensitive | lineage2.2.1 | None | SRR1202558 | Sensitive | lineage2.2.1 | None | SAMN02360573 | Sensitive | lineage2.2.1 | kr | SAMN02398695 | Pre-XDR-TB | lineage2.2.1 | kr | ERR11082693 | Sensitive | lineage2.2.1 | None | ERR13194112 | Sensitive | lineage2.2.1 | None | SRR7496501 | Sensitive | lineage2.2.1 | us | ERR1213836 | MDR-TB | lineage2.2.1 | kr | ERR6866360 | Sensitive | lineage4.3.3 | None |
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