Rv0005 - p.Asn499Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
10 HR-TB
0 MDR-TB
160 Pre-XDR-TB
11 XDR-TB
11 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 103 |
| lineage4.2.1 | 4 |
| lineage4.4.1.1 | 1 |
| lineage3 | 6 |
| lineage4.8 | 27 |
| lineage4 | 5 |
| lineage2.2.2 | 5 |
| lineage4.5 | 3 |
| lineage4.7 | 1 |
| lineage4.1.2.1 | 6 |
| lineage1.1.2 | 1 |
| lineage2.2.1.1 | 5 |
| lineage4.9 | 10 |
| lineage4.9.1 | 2 |
| lineage4.1.2.1.1 | 2 |
| lineage4.1.2.1;lineage4.3.4.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.3.3 | 2 |
| lineage2.1;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage3.1.2.1 | 3 |
| lineage4.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 192 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4828779 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911219 | Pre-XDR-TB | lineage4.2.1 | md | DRR130114 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653198 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR14782279 | Pre-XDR-TB | lineage4.2.1 | None | SRR5341385 | Pre-XDR-TB | lineage3 | in | SRR6824461 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824463 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02350462 | Pre-XDR-TB | lineage2.2.1 | za | SRR23340044 | Pre-XDR-TB | lineage2.2.1 | None | ERR133845 | Pre-XDR-TB | lineage2.2.1 | ru | SRR11871430 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420519 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR1048881 | XDR-TB | lineage4 | None | ERR11043175 | Pre-XDR-TB | lineage2.2.1 | None | ERR13289257 | Pre-XDR-TB | lineage2.2.1 | None | ERR13286169 | Pre-XDR-TB | lineage4.8 | None | SRR12420323 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510764 | Pre-XDR-TB | lineage4.8 | it | ERR4808875 | Pre-XDR-TB | lineage2.2.2 | za | SRR6650209 | Other | lineage4.8 | None | SRR28045905 | Pre-XDR-TB | lineage3 | None | ERR3132175 | Pre-XDR-TB | lineage2.2.1 | None | SRR11871438 | Pre-XDR-TB | lineage2.2.1 | None | SRR15901693 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156764 | HR-TB | lineage2.2.1 | None | ERR13253368 | Pre-XDR-TB | lineage4.5 | None | ERR386992 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423589 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539503 | Pre-XDR-TB | lineage4.7 | None | SRR11871441 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798565 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865565 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274093 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1172230 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085310 | Pre-XDR-TB | lineage1.1.2 | None | SRR15901694 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806868 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266437 | XDR-TB | lineage2.2.1 | None | ERR13285742 | Pre-XDR-TB | lineage4.8 | None | SRR5153716 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273630 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR10762251 | Pre-XDR-TB | lineage4.8 | None | SRR11567795 | XDR-TB | lineage2.2.1 | None | SRR29231073 | HR-TB | lineage4.8 | None | SRR29051098 | Other | lineage2.2.1 | None | ERR4796694 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798102 | Pre-XDR-TB | lineage3 | in | ERR4796579 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796629 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR29055891 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800267 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798564 | Pre-XDR-TB | lineage2.2.1 | in | ERR13242778 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044621 | Pre-XDR-TB | lineage4.8 | None | ERR4798045 | Pre-XDR-TB | lineage2.2.1 | in | SRR17657952 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937099 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285148 | Pre-XDR-TB | lineage4.9 | None | ERR9993153 | Other | lineage4.9.1 | None | ERR3148038 | Pre-XDR-TB | lineage4.9 | None | SAMN02360567 | XDR-TB | lineage4 | kr | SRR1163332 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175470 | Pre-XDR-TB | lineage4.8 | ro | ERR757163 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | SRR14782459 | Other | lineage4.8 | None | SRR28498573 | Pre-XDR-TB | lineage4.2.1 | None | ERR9806662 | Pre-XDR-TB | lineage2.2.2 | None | ERR8975766 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827732 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827620 | XDR-TB | lineage2.2.1 | None | SRR15014755 | Pre-XDR-TB | lineage2.2.1 | None | ERR2179806 | Other | lineage4.5 | cn | ERR2516485 | Pre-XDR-TB | lineage4.1.2.1;lineage4.3.4.2 | pe | ERR2516578 | Pre-XDR-TB | lineage2.2.1 | pe | ERR2516573 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516709 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR1952141 | Pre-XDR-TB | lineage2.2.1 | ie | ERR5865745 | Pre-XDR-TB | lineage2.2.1 | None | SRR29341531 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13267060 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13258429 | Pre-XDR-TB | lineage2.2.1 | None | SRR25515248 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419634 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419611 | Pre-XDR-TB | lineage2.2.1 | by | SRR6485007 | Pre-XDR-TB | lineage4.3.3 | None | SRR5065581 | HR-TB | lineage2.2.1 | vn | SRR6797799 | Pre-XDR-TB | lineage4.8 | None | ERR9119898 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351336 | Pre-XDR-TB | lineage4.8 | None | SRR1048882 | XDR-TB | lineage4 | None | SRR10305620 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796969 | Pre-XDR-TB | lineage4.8 | in | SRR18715078 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653116 | Pre-XDR-TB | lineage4.8 | None | ERR4809322 | Pre-XDR-TB | lineage2.2.2 | za | SRR921502 | Pre-XDR-TB | lineage2.1;lineage2.2.1 | None | SRR17658004 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013576 | XDR-TB | lineage4 | None | ERR10610353 | Pre-XDR-TB | lineage2.2.2 | None | DRR130138 | Pre-XDR-TB | lineage4.5 | None | SRR1140964 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156786 | HR-TB | lineage2.2.1 | None | ERR3639712 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163202 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273673 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR28044493 | Other | lineage3 | None | SRR29053172 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1169119 | Pre-XDR-TB | lineage2.2.1 | None | ERR13439865 | HR-TB | lineage2.2.1 | None | SRR21747027 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653132 | Pre-XDR-TB | lineage4.8 | None | SRR12420702 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681318 | Pre-XDR-TB | lineage2.2.1 | None | SRR13423562 | Pre-XDR-TB | lineage2.2.1 | None | SRR1019136 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289219 | XDR-TB | lineage4.9 | None | SRR29289213 | Pre-XDR-TB | lineage4.9 | None | SRR29289221 | Pre-XDR-TB | lineage4.9 | None | ERR13266708 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289139 | Pre-XDR-TB | lineage4.9 | None | SRR29289172 | Pre-XDR-TB | lineage4.9 | None | SRR1172071 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796544 | Pre-XDR-TB | lineage3 | in | ERR4799173 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4799290 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799988 | Pre-XDR-TB | lineage2.2.1;lineage4 | in | ERR4799286 | Pre-XDR-TB | lineage4.8 | in | SRR8651586 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4809054 | Pre-XDR-TB | lineage2.2.2 | za | ERR6362738 | Pre-XDR-TB | lineage2.2.1 | None | ERR2652997 | Pre-XDR-TB | lineage4.8 | None | ERR8773819 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175208 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828203 | Other | lineage2.2.1 | vn | SRR1163392 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513241 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2513547 | Other | lineage3.1.2.1 | gb | SRR16088406 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045489 | Pre-XDR-TB | lineage3 | None | ERR2653134 | Pre-XDR-TB | lineage4.8 | None | ERR11043176 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993001 | Other | lineage4.9.1 | None | SRR11871445 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273761 | Pre-XDR-TB | lineage4.8 | None | SRR24710234 | Pre-XDR-TB | lineage2.2.1 | None | SRR16370448 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5865564 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723842 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1169033 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738499 | Pre-XDR-TB | lineage4.8 | None | SRR7592387 | Pre-XDR-TB | lineage4.8 | None | ERR13261101 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394281 | Pre-XDR-TB | lineage2.2.1 | None | SRR1163021 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510765 | Pre-XDR-TB | lineage4.8 | None | ERR3132179 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069647 | Other | lineage3.1.2.1 | None | SRR11567794 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538902 | Pre-XDR-TB | lineage2.2.1 | None | SRR29385458 | XDR-TB | lineage2.2.1 | None | ERR4828774 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800627 | HR-TB | lineage3.1.2.1 | None | ERR3639793 | Pre-XDR-TB | lineage2.2.1 | None | SRR14164739 | Other | lineage4.3.2 | None | SRR7131109 | Pre-XDR-TB | lineage4.8 | None | SRR13423543 | Pre-XDR-TB | lineage4.8 | None | ERR2653172 | Pre-XDR-TB | lineage4.3.3 | None | SRR25827640 | XDR-TB | lineage2.2.1 | None | SRR1013575 | Pre-XDR-TB | lineage4 | None | SRR29289388 | XDR-TB | lineage4.9 | None | SRR29289119 | Pre-XDR-TB | lineage4.9 | None | ERR4972509 | Pre-XDR-TB | lineage4.1.2.1.1 | None | ERR4796385 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798728 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796706 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797483 | Pre-XDR-TB | lineage4.8 | in | ERR4798405 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798610 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797151 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797399 | Pre-XDR-TB | lineage2.2.1 | in | SRR26400114 | HR-TB | lineage2.2.1 | None | ERR4800212 | Pre-XDR-TB | lineage2.2.1 | in | ERR9993220 | Pre-XDR-TB | lineage4.9 | None | SRR23861971 | HR-TB | lineage4.8 | None | SRR16156784 | HR-TB | lineage2.2.1 | None | SRR28498441 | Pre-XDR-TB | lineage4.2.1 | None | SRR10380159 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393813 | Pre-XDR-TB | lineage4.8 | None | ERR5865259 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831995 | HR-TB | lineage2.2.1 | vn |
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