Rv0006 - c.384G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
32 Sensitive
0 RR-TB
8 HR-TB
19 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.2.2 | 56 |
| lineage4.9 | 3 |
| lineage4.9;lineage6.3 | 4 |
| La3;lineage4.9 | 3 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.8 | 1 |
| lineage2.1;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage3 | 2 |
| lineage4.1.2.1 | 2 |
| 3 | |
| lineage4.9;lineage7 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4 | 1 |
| lineage5.2 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.3.4 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4798557 | Other | lineage1.2.2.2 | in | ERR4797812 | Pre-XDR-TB | lineage1.2.2.2 | in | SRR28868764 | HR-TB | lineage1.2.2.2 | None | SRR1184294 | Other | lineage4.9 | None | SRR17657967 | Other | lineage1.2.2.2 | None | ERR270664 | MDR-TB | lineage1.2.2.2 | None | SRR28046117 | Other | lineage1.2.2.2 | None | SRR5341274 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR26112439 | Sensitive | lineage1.2.2.2 | None | SRR28044931 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR28045571 | Sensitive | lineage1.2.2.2 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR3132124 | Other | lineage1.2.2.2 | None | ERR403294 | Sensitive | lineage4.8 | None | SRR18911992 | Sensitive | lineage1.2.2.2 | None | ERR4553706 | MDR-TB | lineage1.2.2.2 | None | SRR13583494 | HR-TB | lineage1.2.2.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR13262047 | HR-TB | lineage1.2.2.2 | None | SRR1165699 | Other | lineage4.9 | None | SRR21732233 | Sensitive | lineage1.2.2.2 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR4800142 | Sensitive | lineage3 | None | ERR386892 | MDR-TB | lineage1.2.2.2 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR4799295 | Sensitive | lineage1.2.2.2 | in | ERR13266430 | Sensitive | lineage1.2.2.2 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR28045802 | Sensitive | lineage1.2.2.2 | None | SRR28045978 | Sensitive | lineage1.2.2.2 | None | SRR28045967 | Sensitive | lineage1.2.2.2 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR2099974 | MDR-TB | lineage1.2.2.2 | None | SRR2100920 | MDR-TB | lineage1.2.2.2 | None | ERR4821257 | Sensitive | lineage3 | gb | ERR4822172 | Sensitive | lineage1.2.2.2 | gb | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR18149506 | Sensitive | lineage1.2.2.2 | None | SRR29017378 | MDR-TB | lineage1.2.2.2 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR7585423 | Pre-XDR-TB | lineage1.2.2.2 | in | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4553711 | MDR-TB | lineage1.2.2.2 | None | ERR117667 | MDR-TB | lineage1.2.2.2 | None | SRR2082763 | Sensitive | lineage1.2.2.2 | None | SRR16058557 | Sensitive | lineage1.2.2.2 | None | SRR18693888 | Sensitive | lineage1.2.2.2 | None | ERR278533 | MDR-TB | lineage1.2.2.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR2027263 | Other | lineage4 | None | SRR6789626 | Other | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR4796778 | Sensitive | lineage1.2.2.2 | in | ERR4798241 | Sensitive | lineage1.2.2.2 | in | ERR4797052 | MDR-TB | lineage1.2.2.2 | in | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4798673 | Sensitive | lineage1.2.2.2 | in | ERR4796935 | Sensitive | lineage1.2.2.2 | in | SRR28045769 | Sensitive | lineage1.2.2.2 | None | SRR28044820 | MDR-TB | lineage1.2.2.2 | None | SRR2100231 | MDR-TB | lineage1.2.2.2 | None | ERR4817119 | HR-TB | lineage1.2.2.2 | gb | ERR13265778 | Sensitive | lineage1.2.2.2 | None | SRR29231251 | Sensitive | lineage1.2.2.2 | None | ERR4407463 | HR-TB | None | ERR1213884 | Other | lineage1.2.2.2 | np | SRR1196583 | Other | lineage4.9 | None | SRR12882735 | Sensitive | lineage1.2.2.2 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR13292391 | Sensitive | lineage1.2.2.2 | None | ERR9125548 | Sensitive | lineage1.2.2.2 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR24799221 | Sensitive | lineage1.2.2.2 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR16115883 | Sensitive | lineage1.2.2.2 | None | SRR28409288 | Sensitive | lineage1.2.2.2 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR29050693 | HR-TB | lineage1.2.2.2 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR29017621 | MDR-TB | lineage1.2.2.2 | None | ERR270685 | MDR-TB | lineage1.2.2.2 | None | ERR4798004 | Other | lineage1.2.2.2 | in |
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