Rv0006 - p.Gly88Cys
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
3 HR-TB
0 MDR-TB
238 Pre-XDR-TB
23 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 81 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.1.1.3 | 10 |
| lineage4.1.2.1 | 7 |
| lineage3 | 15 |
| lineage1.1.2 | 2 |
| lineage4.3.3 | 34 |
| lineage4.2.1 | 7 |
| lineage4.4.1.1.1 | 3 |
| lineage2.2.2 | 65 |
| lineage2.2.1;lineage4.3.3 | 5 |
| lineage4.4.1.1 | 7 |
| lineage2.2.1.1 | 10 |
| lineage3.1 | 1 |
| lineage4.8 | 1 |
| 2 | |
| lineage4.5 | 11 |
| lineage4.3.2 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1.1 | 1 |
| lineage2.1 | 2 |
| lineage3.1.2 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4.1.1 | 1 |
| lineage2.2.2;lineage4.3.2.1 | 2 |
| lineage4.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.2.1.1 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage3.1.2;lineage4 | 1 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 287 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5863866 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827607 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | None | ERR9993009 | XDR-TB | lineage4.1.1.3 | None | SRR29050697 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29772791 | Pre-XDR-TB | lineage3 | None | ERR13284046 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827684 | Pre-XDR-TB | lineage1.1.2 | None | SRR29539809 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420416 | Other | lineage2.2.1 | None | SRR13232439 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992654 | XDR-TB | lineage4.3.3 | None | SRR14801530 | Pre-XDR-TB | lineage4.2.1 | None | ERR8665506 | Pre-XDR-TB | lineage4.3.3 | None | ERR3335786 | Pre-XDR-TB | lineage3 | pk | SRR29289346 | Pre-XDR-TB | lineage3 | None | SRR29289133 | XDR-TB | lineage2.2.1 | None | ERR13289895 | Pre-XDR-TB | lineage4.3.3 | None | SRR1019141 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR4796898 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798186 | Pre-XDR-TB | lineage4.3.3 | in | ERR8025533 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798945 | Pre-XDR-TB | lineage3 | in | ERR5863878 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864454 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866045 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800348 | Pre-XDR-TB | lineage4.3.3 | in | SRR7516319 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715343 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172073 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR12118051 | Pre-XDR-TB | lineage4.3.3 | None | SRR29055528 | Pre-XDR-TB | lineage2.2.2 | None | ERR4813848 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR4798507 | Pre-XDR-TB | lineage4.3.3 | in | ERR4011101 | Other | lineage2.2.1.1 | None | ERR13291050 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351186 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045564 | Pre-XDR-TB | lineage3.1 | None | ERR4822340 | Pre-XDR-TB | lineage4.8 | de | ERR7911554 | Pre-XDR-TB | lineage2.2.2 | za | SRR10397164 | Pre-XDR-TB | lineage2.2.1 | None | SRR8186782 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045924 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975713 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869262 | Pre-XDR-TB | lineage2.2.2 | None | SRR23938609 | Pre-XDR-TB | lineage2.2.1 | None | SRR8186773 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864457 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02403442 | Pre-XDR-TB | lineage2.2.2 | za | SAMN02403451 | Pre-XDR-TB | lineage2.2.2 | za | SAMN02403479 | Pre-XDR-TB | lineage2.2.2 | za | SRR18911240 | Other | lineage4.1.2.1 | None | ERR4553494 | Pre-XDR-TB | None | ERR11488353 | XDR-TB | lineage4.4.1.1 | None | ERR13289299 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4553590 | Pre-XDR-TB | None | SRR14807642 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993180 | XDR-TB | lineage2.2.2 | None | ERR10748257 | XDR-TB | lineage2.2.2 | None | ERR4830762 | Pre-XDR-TB | lineage4.5 | ir | SRR9224939 | Pre-XDR-TB | lineage4.3.2 | None | SRR16089539 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29053305 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093783 | Pre-XDR-TB | lineage4.3.4.2.1 | None | ERR9993239 | XDR-TB | lineage2.2.2 | None | SRR6044802 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025476 | Pre-XDR-TB | lineage2.2.2 | None | ERR13289404 | XDR-TB | lineage2.2.1.1 | None | ERR5758373 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025694 | Pre-XDR-TB | lineage2.2.2 | None | SRR11871437 | Pre-XDR-TB | lineage2.2.1 | None | SRR28170836 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13291602 | Other | lineage4.5 | None | SRR1173202 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173405 | Pre-XDR-TB | lineage2.2.2 | None | ERR11488890 | XDR-TB | lineage4.4.1.1 | None | SRR26937134 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13284092 | Pre-XDR-TB | lineage2.2.1 | None | ERR13262024 | Pre-XDR-TB | lineage4.3.3 | None | ERR7911622 | Pre-XDR-TB | lineage2.2.2 | None | ERR8665626 | Pre-XDR-TB | lineage4.3.3 | None | ERR10748484 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR13290888 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119800 | Other | lineage2.2.1 | None | ERR9993162 | XDR-TB | lineage2.2.2 | None | ERR13260673 | Pre-XDR-TB | lineage4.3.3 | None | SRR8791314 | HR-TB | lineage4.2.1 | None | ERR9993154 | XDR-TB | lineage3.1.1 | None | SRR1173305 | Pre-XDR-TB | lineage2.2.2 | None | SRR1173137 | Pre-XDR-TB | lineage2.2.2 | None | ERR9807004 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR8791340 | Pre-XDR-TB | lineage4.2.1 | None | SRR25515074 | Other | lineage2.2.1 | None | ERR13288893 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02350479 | Pre-XDR-TB | lineage4.4.1.1.1 | za | SRR1173175 | Pre-XDR-TB | lineage2.2.2 | None | SRR8791313 | Pre-XDR-TB | lineage4.2.1 | None | ERR15686456 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29016858 | Pre-XDR-TB | lineage3 | None | ERR13290675 | Pre-XDR-TB | lineage2.1 | None | SRR10869291 | Pre-XDR-TB | lineage2.2.2 | None | ERR4800556 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800545 | Other | lineage3 | in | DRR261048 | HR-TB | lineage2.2.1 | None | ERR4813087 | Pre-XDR-TB | lineage4.3.3 | pe | SRR1167311 | Pre-XDR-TB | lineage2.2.2 | None | ERR7911600 | Pre-XDR-TB | lineage2.2.2 | za | ERR9993178 | Pre-XDR-TB | lineage2.2.2 | None | SRR1165232 | Pre-XDR-TB | lineage2.2.2 | None | SRR26399879 | Other | lineage2.1 | None | SRR2100527 | Other | lineage3.1.2 | None | ERR067761 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2516750 | Pre-XDR-TB | lineage3 | gb | ERR2516947 | Pre-XDR-TB | lineage3 | gb | ERR2517052 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516856 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516491 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR8025659 | Pre-XDR-TB | lineage2.2.2 | None | ERR11488380 | XDR-TB | lineage4.4.1.1 | None | SRR29093889 | Pre-XDR-TB | lineage2.2.2 | None | ERR13249751 | Pre-XDR-TB | lineage4.5 | None | SRR28558426 | Other | lineage4.3.3 | None | SRR16097557 | Other | lineage4.5 | None | ERR8665659 | Pre-XDR-TB | lineage4.3.3 | None | ERR5863865 | Pre-XDR-TB | lineage2.2.1 | None | SRR10379916 | Pre-XDR-TB | lineage4.2.1 | None | SRR25206894 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873490 | Pre-XDR-TB | lineage2.2.2 | za | ERR5864460 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044765 | Pre-XDR-TB | lineage2.2.1 | None | SRR8186774 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025587 | Pre-XDR-TB | lineage2.2.2 | None | ERR4813106 | Pre-XDR-TB | lineage4.1.1 | None | SRR10869206 | Pre-XDR-TB | lineage2.2.2;lineage4.3.2.1 | None | ERR9993133 | XDR-TB | lineage4.3.3 | None | ERR5864455 | Pre-XDR-TB | lineage2.2.1 | None | ERR4809074 | Pre-XDR-TB | lineage2.2.2 | za | ERR8025430 | Pre-XDR-TB | lineage2.2.2 | None | SRR8186781 | Pre-XDR-TB | lineage2.2.1 | None | SRR8186766 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165247 | Pre-XDR-TB | lineage2.2.2 | None | SRR13870429 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5866498 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806814 | Pre-XDR-TB | lineage2.2.2 | None | ERR8025620 | Pre-XDR-TB | lineage2.2.2 | None | ERR8665505 | Pre-XDR-TB | lineage4.3.3 | None | ERR8665765 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290756 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165229 | Pre-XDR-TB | lineage2.2.2 | None | ERR13261380 | Pre-XDR-TB | lineage3 | None | SRR1165238 | Pre-XDR-TB | lineage2.2.2 | None | ERR13249510 | Pre-XDR-TB | lineage4.5 | None | SRR1167277 | Pre-XDR-TB | lineage2.2.2 | None | ERR13291216 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025711 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1873400 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29050677 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5864456 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056314 | Pre-XDR-TB | lineage2.2.2 | None | ERR13260585 | HR-TB | lineage4.3.4.2 | None | ERR5866044 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017462 | Pre-XDR-TB | lineage3 | None | SRR7069659 | Pre-XDR-TB | lineage4.3.3 | None | ERR8025460 | Pre-XDR-TB | lineage2.2.2;lineage4.3.2.1 | None | DRR130207 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538959 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289347 | Pre-XDR-TB | lineage3 | None | SRR30180346 | Pre-XDR-TB | lineage2.2.1 | None | SRR6930934 | Pre-XDR-TB | lineage4.1 | None | ERR8665625 | Pre-XDR-TB | lineage4.3.3 | None | ERR5864458 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796521 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR5758434 | Pre-XDR-TB | lineage2.2.2 | None | ERR13260661 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4798352 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4797175 | Pre-XDR-TB | lineage4.3.3 | in | SRR1167310 | Pre-XDR-TB | lineage2.2.2 | None | ERR13290812 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017555 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR5153317 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169046 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR10397155 | Pre-XDR-TB | lineage2.2.1 | None | ERR10112847 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267002 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043211 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812196 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4809076 | Pre-XDR-TB | lineage2.2.2 | za | SRR28240003 | Other | lineage4.2.1.1 | None | SRR28044888 | Other | lineage3.1.2.1 | None | SRR8186776 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810925 | Pre-XDR-TB | lineage4 | cn | ERR8665834 | Pre-XDR-TB | lineage4.3.3 | None | SRR1140936 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1173423 | Pre-XDR-TB | lineage2.2.2 | None | ERR4831488 | Pre-XDR-TB | lineage3 | None | ERR7911368 | Pre-XDR-TB | lineage4.3.3 | pe | ERR5917999 | Pre-XDR-TB | lineage2.2.2 | za | ERR7911559 | Pre-XDR-TB | lineage2.2.2 | za | ERR7911602 | Pre-XDR-TB | lineage2.2.2 | za | ERR4813050 | Pre-XDR-TB | lineage4.3.3 | None | ERR8665992 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911632 | Pre-XDR-TB | lineage2.2.2 | za | ERR7911192 | Pre-XDR-TB | lineage4.3.3 | za | ERR502924 | Other | lineage2.2.1 | None | ERR4813348 | Pre-XDR-TB | lineage4.3.3 | None | ERR10748256 | XDR-TB | lineage2.2.2 | None | ERR8975659 | XDR-TB | lineage2.2.2 | None | ERR8975803 | XDR-TB | lineage2.2.1 | None | SRR1163374 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR1173500 | Pre-XDR-TB | lineage2.2.2 | None | ERR5864452 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864459 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510647 | Pre-XDR-TB | lineage3 | pk | ERR7361979 | Pre-XDR-TB | lineage2.2.2 | None | ERR1873551 | Pre-XDR-TB | lineage2.2.2 | za | ERR1873564 | Pre-XDR-TB | lineage2.2.2 | za | ERR1873429 | Pre-XDR-TB | lineage2.2.2 | za | ERR4814715 | Other | lineage3 | gb | ERR2513126 | Pre-XDR-TB | lineage4.3.3 | gb | ERR2513819 | Pre-XDR-TB | lineage4.3.3 | gb | SRR6045972 | Pre-XDR-TB | lineage4.3.3 | gb | SRR24827284 | Other | lineage4.1.2.1 | None | SRR28046135 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR133848 | Pre-XDR-TB | lineage2.2.1 | ru | SAMN02419670 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | by | ERR8025745 | Pre-XDR-TB | lineage2.2.2 | None | ERR11488352 | XDR-TB | lineage4.4.1.1 | None | ERR5897089 | Pre-XDR-TB | lineage3 | None | SRR25515228 | Other | lineage2.2.1 | None | SRR29127049 | Pre-XDR-TB | lineage1.2.1.2.1 | None | SRR1167181 | Pre-XDR-TB | lineage2.2.2 | None | SRR11871429 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830778 | Pre-XDR-TB | lineage4.5 | None | ERR4799983 | Pre-XDR-TB | lineage3.1.2;lineage4 | None | SRR13870410 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02403485 | Pre-XDR-TB | lineage2.2.2 | za | SRR10869097 | Pre-XDR-TB | lineage2.2.2 | None | SRR8186775 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762342 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR28888051 | XDR-TB | lineage4.3.3 | None | SRR6930923 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR28046123 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827770 | XDR-TB | lineage2.2.1 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR5864453 | Pre-XDR-TB | lineage2.2.1 | None | SRR13120434 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011122 | Pre-XDR-TB | lineage2.2.2 | None | ERR3287582 | Pre-XDR-TB | lineage4.3.3 | None | ERR5918002 | Pre-XDR-TB | lineage2.2.2 | za | SRR22424791 | Pre-XDR-TB | lineage1.1.2 | None | ERR4011108 | Other | lineage2.2.1.1 | None | SRR23310932 | XDR-TB | lineage4.2.1 | None | ERR7902741 | Other | lineage1.2.1.2.1 | None | SRR21276923 | Pre-XDR-TB | lineage4.5 | None | SRR11871424 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576699 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290678 | Pre-XDR-TB | lineage2.2.1 | None | SRR25515430 | Other | lineage2.2.1 | None | ERR11488951 | XDR-TB | lineage4.4.1.1 | None | ERR11082007 | Pre-XDR-TB | lineage2.2.1 | None | SRR10147685 | Pre-XDR-TB | lineage4.5 | None | SRR10147703 | Pre-XDR-TB | lineage4.5 | None | ERR10610127 | Pre-XDR-TB | lineage2.2.2 | None | ERR13260967 | Pre-XDR-TB | lineage2.2.1 | None | SRR23861993 | Pre-XDR-TB | lineage2.2.1 | None | SRR8186778 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175331 | Pre-XDR-TB | lineage2.2.2 | None | ERR4011102 | Other | lineage2.2.1.1 | None | ERR5866497 | Pre-XDR-TB | lineage2.2.1 | None | ERR228170 | Other | lineage3.1.2 | None | ERR5758428 | Pre-XDR-TB | lineage2.2.2 | None | SRR29051045 | Pre-XDR-TB | lineage4.3.2 | None | ERR8665764 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315955 | Pre-XDR-TB | lineage4.5 | None | ERR11488969 | XDR-TB | lineage4.4.1.1 | None | SRR22424762 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR9993119 | Pre-XDR-TB | lineage4.3.3 | None | SRR18715420 | Pre-XDR-TB | lineage2.2.1 | None | ERR13249496 | Pre-XDR-TB | lineage4.5 | None | ERR5758350 | Pre-XDR-TB | lineage2.2.2 | None | ERR5987219 | Pre-XDR-TB | lineage2.2.2 | None | ERR13292278 | Other | lineage4.1.2.1 | None | ERR13291163 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | ERR8665660 | Pre-XDR-TB | lineage4.3.3 | None | ERR9806866 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR23340088 | XDR-TB | lineage2.2.1 | None | SRR1163172 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None |
|---|
