lineage | Count |
---|---|
lineage3.1.2 | 5 |
lineage4.1.2.1 | 3 |
lineage4.3.3 | 14 |
lineage4.2.2.2 | 1 |
lineage4.3.4.1 | 4 |
lineage4.1.1.1 | 2 |
lineage4.8 | 31 |
lineage2.2.1 | 11 |
lineage4.6.1.2 | 6 |
lineage4.4.1.1 | 1 |
lineage1.2.2.2 | 3 |
lineage4.1.4 | 4 |
lineage2.2.1;lineage4.8 | 1 |
lineage3;lineage4.3.4.2 | 1 |
lineage3 | 6 |
lineage2.2.1;lineage4 | 1 |
lineage2.2.1.1 | 2 |
lineage4.1.1 | 1 |
lineage4.7 | 2 |
lineage3.1.2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage3.1 | 1 |
lineage4.4.2 | 1 |
lineage3.1.3 | 1 |
lineage2.2.2 | 4 |
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
lineage1.2.2.2;lineage4.3.3 | 1 |
lineage6.3.3 | 1 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 113 |
ID | Drug resistance | Lineage | Country iso2 | SRR1180464 | RR-TB | lineage3.1.2 | None | ERR9119533 | MDR-TB | lineage4.1.2.1 | None | SRR13583442 | MDR-TB | lineage4.3.3 | None | ERR11081327 | RR-TB | lineage4.2.2.2 | None | SRR7517786 | MDR-TB | lineage4.3.4.1 | None | ERR2516571 | MDR-TB | lineage4.1.1.1 | nl | SRR25827874 | MDR-TB | lineage4.8 | None | ERR7911321 | MDR-TB | lineage2.2.1 | vn | SRR10726045 | MDR-TB | lineage4.3.3 | None | SRR3732579 | MDR-TB | lineage4.3.4.1 | None | ERR10112865 | Pre-XDR-TB | lineage4.8 | None | SRR16157095 | Pre-XDR-TB | lineage4.8 | None | ERR1654678 | RR-TB | lineage4.6.1.2 | None | ERR4796946 | MDR-TB | lineage4.8 | in | ERR5865065 | MDR-TB | lineage4.8 | None | ERR551015 | MDR-TB | lineage2.2.1 | None | SRR6485171 | RR-TB | lineage4.8 | None | ERR2041751 | MDR-TB | lineage4.1.2.1 | rs | ERR4830104 | MDR-TB | lineage4.3.3 | tj | SRR9224995 | MDR-TB | lineage4.3.3 | None | SRR28389905 | MDR-TB | lineage4.4.1.1 | None | SRR28045001 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR28351576 | MDR-TB | lineage4.8 | None | ERR6362788 | MDR-TB | lineage2.2.1 | None | ERR4872120 | MDR-TB | lineage4.1.4 | None | ERR4800367 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | in | SRR25827381 | Pre-XDR-TB | lineage3;lineage4.3.4.2 | None | ERR8025470 | Pre-XDR-TB | lineage4.8 | None | ERR8975707 | Pre-XDR-TB | lineage4.8 | None | ERR9993197 | Pre-XDR-TB | lineage4.8 | None | SRR25827688 | Pre-XDR-TB | lineage3 | None | SRR9225003 | MDR-TB | lineage4.3.3 | None | SRR25827430 | Pre-XDR-TB | lineage2.2.1;lineage4 | None | ERR8976090 | RR-TB | lineage2.2.1.1 | None | SRR18715276 | Pre-XDR-TB | lineage4.3.3 | None | ERR4830700 | MDR-TB | lineage4.3.3 | dz | ERR4813782 | MDR-TB | lineage4.3.4.1 | br | ERR551016 | MDR-TB | lineage2.2.1 | None | ERR4797669 | Pre-XDR-TB | lineage4.8 | in | ERR751520 | MDR-TB | lineage4.1.1 | pe | ERR551016_ERR551015 | MDR-TB | lineage2.2.1 | None | ERR9119526 | MDR-TB | lineage4.1.4 | None | SRR15014786 | MDR-TB | lineage3 | None | ERR10610166 | MDR-TB | lineage4.8 | None | ERR9119613 | MDR-TB | lineage4.1.4 | None | SRR25534347 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865066 | MDR-TB | lineage4.8 | None | SRR7341639 | MDR-TB | lineage4.7 | ro | ERR9992758 | Pre-XDR-TB | lineage4.8 | None | SRR24255939 | Pre-XDR-TB | lineage4.3.3 | None | ERR4799182 | Pre-XDR-TB | lineage4.8 | in | SRR17406769 | Pre-XDR-TB | lineage4.8 | None | SAMEA2533636 | MDR-TB | lineage2.2.1 | uz | SRR1169539 | MDR-TB | lineage3.1.2 | None | SRR21576730 | RR-TB | lineage2.2.1 | None | ERR9806659 | MDR-TB | lineage4.8 | None | SRR9224924 | Sensitive | lineage4.3.3 | None | SRR21576586 | MDR-TB | lineage2.2.1 | None | ERR4799775 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR1173425 | MDR-TB | lineage4.6.1.2 | None | ERR11776041 | MDR-TB | lineage4.7 | None | SRR28045706 | Pre-XDR-TB | lineage4.8 | None | SRR28045916 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR2510590 | Pre-XDR-TB | lineage3.1 | pk | ERR4829131 | Pre-XDR-TB | lineage3 | pk | ERR9806893 | Pre-XDR-TB | lineage4.8 | None | ERR4872127 | MDR-TB | lineage4.1.2.1 | None | SRR10040146 | RR-TB | lineage4.4.2 | None | ERR9992991 | Pre-XDR-TB | lineage4.8 | None | SRR9224970 | MDR-TB | lineage4.3.3 | None | ERR9119695 | MDR-TB | lineage2.2.1 | None | ERR4799095 | MDR-TB | lineage1.2.2.2 | in | SRR1180256 | RR-TB | lineage3.1.2 | None | SRR25827805 | XDR-TB | lineage3.1.3 | None | ERR10112848 | XDR-TB | lineage4.8 | None | SAMN02567680 | MDR-TB | lineage4.6.1.2 | ug | ERR4800074 | MDR-TB | lineage1.2.2.2 | in | ERR4797483 | Pre-XDR-TB | lineage4.8 | in | ERR4798532 | MDR-TB | lineage3 | in | SRR10828192 | Pre-XDR-TB | lineage2.2.2 | None | SRR28239722 | MDR-TB | lineage2.2.1 | None | SRR1172136 | MDR-TB | lineage3.1.2 | None | SRR15600357 | MDR-TB | lineage2.2.1.1 | None | SRR9224932 | MDR-TB | lineage4.3.3 | None | SRR25827402 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None | ERR4799754 | Pre-XDR-TB | lineage4.8 | in | SRR5709759 | Pre-XDR-TB | lineage2.2.2 | th | ERR4813788 | MDR-TB | lineage4.3.4.1 | br | SRR13583387 | MDR-TB | lineage4.3.3 | None | ERR1199100 | RR-TB | lineage4.6.1.2 | cd | ERR7911699 | Pre-XDR-TB | lineage4.8 | za | ERR4796864 | Pre-XDR-TB | lineage4.8 | in | SRR9224946 | MDR-TB | lineage4.3.3 | None | ERR5865965 | MDR-TB | lineage4.3.3 | None | ERR5865067 | MDR-TB | lineage4.8 | None | SAMN02599048 | MDR-TB | lineage3.1.2 | in | ERR2707074 | RR-TB | lineage4.6.1.2 | cd | SRR28351255 | RR-TB | lineage3 | None | SRR28351437 | Pre-XDR-TB | lineage3 | None | SRR5709803 | Pre-XDR-TB | lineage2.2.2 | th | SRR25827488 | MDR-TB | lineage1.2.2.2;lineage4.3.3 | None | ERR2516689 | MDR-TB | lineage4.1.1.1 | nl | SRR5709960 | Pre-XDR-TB | lineage2.2.2 | th | ERR8975807 | MDR-TB | lineage4.8 | None | ERR9806927 | Pre-XDR-TB | lineage4.8 | None | ERR4809351 | Pre-XDR-TB | lineage4.8 | za | SRR25827345 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | None | ERR4872219 | MDR-TB | lineage4.1.4 | None | ERR10679998 | MDR-TB | lineage6.3.3 | None | ERR7737667 | MDR-TB | lineage4.3.2.1 | None | ERR5865068 | MDR-TB | lineage4.8 | None | SRR1174286 | MDR-TB | lineage4.6.1.2 | None | SRR16157104 | Pre-XDR-TB | lineage4.8 | None |
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