Rv1173 - c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT
Drug resistance types
0 Sensitive
8 RR-TB
24 HR-TB
73 MDR-TB
13 Pre-XDR-TB
1 XDR-TB
627 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 189 |
| La1.3 | 4 |
| La2 | 12 |
| lineage4.3.4.2 | 86 |
| La1.7.1 | 52 |
| lineage4.3.3 | 20 |
| lineage4.1.2.1 | 18 |
| lineage4.3.4.1 | 8 |
| lineage7 | 8 |
| lineage4.8 | 13 |
| lineage3.1.1 | 11 |
| lineage4.5 | 72 |
| lineage4.6.2.2 | 27 |
| lineage4.3.4.2.1 | 24 |
| lineage3 | 66 |
| lineage4 | 6 |
| lineage3.1.2.1 | 11 |
| lineage4.2.2 | 1 |
| lineage4.1.1.1 | 4 |
| La1.8.2 | 2 |
| lineage3.1.2 | 10 |
| lineage4.1.2.1;lineage4.6.2.2 | 1 |
| lineage1.1.2 | 5 |
| La1.2 | 9 |
| lineage4.3.2 | 4 |
| lineage2.2.2 | 1 |
| lineage4.9 | 3 |
| lineage1.2.2.2 | 3 |
| 1 | |
| lineage2.2.1 | 18 |
| La1.1 | 1 |
| lineage4.4.1.1 | 4 |
| La1.4 | 3 |
| lineage1.2.1.2.1 | 2 |
| La1.2.BCG | 20 |
| La3 | 5 |
| lineage4.1 | 6 |
| lineage4.7 | 1 |
| lineage4.2.1 | 1 |
| lineage4.3.4.2;lineage6.1.3 | 1 |
| La1.6 | 1 |
| lineage4.8.1 | 3 |
| lineage4.1.2 | 2 |
| lineage3.1.1;lineage4.3.4.2.1 | 1 |
| lineage5.3 | 1 |
| lineage1.1.1.1 | 1 |
| La1.7 | 1 |
| lineage3.1.3 | 1 |
| lineage4.3.1 | 1 |
| lineage2.2.1.2;lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 746 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7617538 | Other | La1.8.1 | None | SRR8063651 | Other | La1.3 | None | SRR25167934 | Other | La2 | None | ERR551812 | Other | lineage4.3.4.2 | None | SRR7240406 | Other | La1.7.1 | None | ERR1193845 | Other | lineage4.3.3 | cg | ERR4195444 | Other | lineage4.1.2.1 | None | ERR1193851 | Other | lineage4.3.4.2 | cg | SRR1792436 | Other | La1.8.1 | None | ERR2515903 | MDR-TB | lineage4.3.4.1 | za | SRR7240035 | Other | La1.8.1 | None | ERR1971868 | Other | lineage7 | et | SRR25167927 | Other | La1.7.1 | None | ERR1193857 | Other | lineage4.3.4.1 | ga | ERR3132209 | MDR-TB | lineage4.8 | None | SRR18391769 | Other | La1.7.1 | es | SRR7240228 | Other | La1.8.1 | None | ERR11083092 | MDR-TB | lineage4.1.2.1 | None | SRR1791835 | Other | La1.8.1 | None | ERR9786767 | Other | lineage4.3.4.2 | None | SRR19418609 | Other | lineage3.1.1 | None | SRR1792143 | Other | La1.8.1 | None | SRR19158663 | Other | lineage4.5 | None | ERR10877870 | Pre-XDR-TB | lineage4.3.3 | None | ERR9125519 | Other | lineage4.6.2.2 | None | ERR10748076 | MDR-TB | lineage4.3.4.2.1 | None | SRR14296322 | Other | La1.8.1 | None | ERR9901100 | Other | lineage3 | None | SRR1791965 | Other | La1.8.1 | None | SRR7240044 | Other | La1.8.1 | None | SRR26112159 | Other | lineage4.3.4.2 | None | ERR4195655 | Other | lineage4 | None | ERR3799549 | Other | lineage4.3.4.2 | None | SRR16057877 | Other | lineage4.6.2.2 | None | SRR1792136 | Other | La1.8.1 | None | ERR2515691 | MDR-TB | lineage3.1.1 | za | SRR1792171 | Other | La1.7.1 | None | SRR7240290 | Other | La1.8.1 | None | ERR551513 | MDR-TB | lineage4.3.4.2 | None | ERR9125481 | Other | lineage4.5 | None | ERR3799544 | Other | lineage4.6.2.2 | None | SRR1791973 | Other | La1.8.1 | None | SRR16058632 | Other | lineage3.1.2.1 | None | ERR3806600 | Other | lineage4.6.2.2 | None | SRR19428593 | Other | lineage4.3.4.2.1 | None | ERR9786612 | Other | lineage4.3.4.2 | None | SRR21658621 | Other | lineage4.2.2 | None | SRR24827302 | HR-TB | lineage4.1.1.1 | None | SRR20551043 | Other | La1.7.1 | None | DRR473974 | Other | lineage4.5 | None | DRR474046 | Other | lineage4.5 | None | ERR552386 | Other | lineage4.3.4.2 | None | SRR16089855 | Other | lineage4.5 | None | SRR7617656 | Other | La1.8.1 | None | SRR15296972 | Other | La1.8.2 | None | ERR10748246 | MDR-TB | lineage4.3.3 | None | ERR3801497 | Other | lineage4.3.4.2 | None | ERR3256115 | MDR-TB | lineage4.3.4.2 | ph | SRR14296119 | Other | La1.8.1 | None | SRR24827287 | MDR-TB | lineage3.1.2 | None | ERR1193891 | HR-TB | lineage4.3.4.2.1 | sz | SRR5216868 | Other | La1.8.1 | None | SRR1792199 | Other | La1.8.1 | None | ERR9786902 | Other | lineage4.1.2.1;lineage4.6.2.2 | None | SRR24799288 | Other | lineage1.1.2 | None | ERR3799598 | Other | lineage4.6.2.2 | None | SRR7240551 | Other | La1.8.1 | None | SRR21686108 | HR-TB | lineage4.3.4.2 | None | SRR16089541 | Other | lineage4.8 | None | SRR13199756 | Other | La1.2 | None | SRR8600177 | Other | La1.8.1 | None | SRR7236317 | Other | La1.8.1 | None | SRR16058579 | Other | lineage1.1.2 | None | SRR17111236 | Other | La2 | None | SRR1792502 | Other | La1.7.1 | None | SRR21747056 | Pre-XDR-TB | lineage4.5 | None | ERR9786776 | Other | lineage4.3.4.2 | None | ERR3804011 | Other | lineage4.3.4.2 | None | SRR6982010 | Other | lineage3 | None | SRR18391694 | Other | La1.7.1 | es | ERR6358029 | Other | La1.2 | None | SRR14296187 | Other | La1.8.1 | None | ERR1971867 | Other | lineage7 | et | ERR9786895 | Other | lineage4.6.2.2 | None | SRR17111235 | Other | La2 | None | SRR1792182 | Other | La1.8.1 | None | SRR21662761 | Other | lineage4.5 | None | SRR15296983 | Other | La1.7.1 | None | ERR2041719 | MDR-TB | lineage4.1.2.1 | rs | SRR5216784 | Other | La1.8.1 | None | SRR6981942 | Other | lineage4.6.2.2 | None | SRR21727733 | Other | lineage4.3.2 | None | ERR2515945 | Other | lineage3 | za | SRR18391699 | Other | La1.7.1 | es | SRR25206920 | MDR-TB | lineage2.2.2 | None | ERR2864241 | XDR-TB | lineage4.3.4.2 | pt | SRR7617701 | Other | La1.8.1 | None | SRR2101642 | Other | lineage4.9 | None | SRR1792424 | Other | La1.8.1 | None | ERR9786078 | Other | lineage3 | None | ERR9786768 | Other | lineage4.3.4.2 | None | SRR15296949 | Other | La1.8.2 | None | SRR14296338 | Other | La1.8.1 | None | ERR9786991 | Other | lineage4.3.4.2 | None | SRR5481421 | Other | lineage4.3.4.2 | None | SRR28501927 | Other | La1.7.1 | None | SRR28170697 | Other | lineage3 | None | SRR28409309 | Other | lineage4.1.2.1 | None | SRR28409318 | Other | lineage3 | None | SRR28409386 | Other | lineage3.1.2.1 | None | SRR28409531 | Other | lineage3 | None | SRR28558424 | Other | La1.8.1 | None | ERR12976098 | Other | La1.2 | None | SRR28501928 | Other | La1.7.1 | None | SRR28409519 | Other | lineage1.2.2.2 | None | SRR28409336 | HR-TB | lineage4.3.4.2 | None | SRR28409541 | Other | lineage4.3.3 | None | ERR4553724 | Pre-XDR-TB | None | SRR28705415 | Other | lineage4.3.4.2 | None | ERR1971877 | Other | lineage7 | et | SRR28741144 | MDR-TB | lineage4.5 | None | ERR11893481 | Other | La1.8.1 | None | ERR550638 | Other | lineage4.1.2.1 | None | SRR21676317 | Other | lineage4.5 | None | SRR26112513 | Other | lineage3 | None | SRR23174493 | Other | La1.8.1 | None | SRR1792036 | Other | La1.8.1 | None | ERR2515258 | Other | lineage4.3.4.2.1 | za | SRR7617437 | Other | La1.8.1 | None | SRR24799256 | Other | lineage2.2.1 | None | SRR2101613 | Other | lineage3 | None | ERR9786567 | Other | lineage4.3.4.2 | None | ERR9786335 | Other | lineage4.3.4.2 | None | SRR16058181 | Other | lineage3 | None | SRR13180336 | Other | lineage4.8 | None | SRR1791822 | Other | La1.8.1 | None | SRR5657505 | Other | La1.8.1 | mx | SRR8065083 | Other | La1.1 | None | SRR21576596 | RR-TB | lineage4.5 | None | SRR19428628 | HR-TB | lineage4.3.4.2.1 | None | ERR10748229 | MDR-TB | lineage4.4.1.1 | None | SRR16278259 | Other | La1.4 | None | ERR9786744 | Other | lineage4.3.4.1 | None | SRR1791991 | Other | La1.8.1 | None | SRR26112334 | Other | lineage4.3.4.2 | None | ERR5979433 | MDR-TB | lineage3 | None | SRR26112292 | Other | La1.8.1 | None | ERR3256168 | RR-TB | lineage1.2.1.2.1 | ph | SRR21657197 | Other | lineage3.1.2.1 | None | SRR7240047 | Other | La1.8.1 | None | SRR28170741 | Other | lineage4.5 | None | SRR21657451 | Other | lineage3 | None | ERR9125853 | Other | La1.2.BCG | None | SRR1791783 | Other | La1.8.1 | None | SRR10305989 | MDR-TB | lineage4.5 | None | SRR19358248 | Other | lineage3.1.1 | None | SRR21658643 | Other | lineage4.1.1.1 | None | SRR7617558 | Other | La1.8.1 | None | ERR9786082 | Other | lineage3 | None | SRR6855717 | Other | lineage4.3.4.2.1 | None | ERR9786166 | Other | lineage4.3.4.2 | None | ERR1971866 | Other | lineage7 | et | ERR2515555 | Other | lineage3.1.2 | za | SRR16089410 | Other | La3 | None | SRR7617442 | Other | La1.8.1 | None | SRR28170722 | Other | La1.2.BCG | None | SRR21747029 | MDR-TB | lineage1.2.2.2 | None | SRR7240473 | Other | La1.8.1 | None | ERR9786888 | Other | lineage4.3.4.2 | None | SRR1791772 | Other | La1.8.1 | None | SRR5216778 | Other | La1.8.1 | None | ERR9786146 | Other | lineage4.3.4.1 | None | DRR189066 | HR-TB | lineage4.5 | None | SRR26112512 | Other | La1.8.1 | None | SRR26125032 | Other | lineage1.1.2 | None | SRR14296369 | Other | La1.8.1 | None | ERR9125548 | Other | lineage1.2.2.2 | None | ERR9786844 | Other | lineage4.3.4.2 | None | SRR1791879 | Other | La1.8.1 | None | ERR6358027 | Other | La1.2 | None | SRR18914032 | Other | lineage4.3.4.2 | None | SRR17077295 | Other | La1.7.1 | None | SRR7240380 | Other | La1.8.1 | None | ERR10869436 | MDR-TB | lineage4.3.3 | None | SRR7240028 | Other | La1.7.1 | None | SRR14296181 | Other | La1.8.1 | None | SRR7236224 | Other | La1.8.1 | None | SRR8600308 | Other | La1.8.1 | None | SRR1792072 | Other | La1.8.1 | None | SRR14296362 | Other | La1.8.1 | None | SRR23174281 | Other | La1.8.1 | None | SRR17111224 | Other | La2 | None | SRR14296177 | Other | La1.8.1 | None | SRR14296095 | Other | La1.8.1 | None | ERR3806454 | MDR-TB | lineage4.6.2.2 | None | SRR20551033 | Other | La1.7.1 | None | SRR8600309 | Other | La1.8.1 | None | DRR188782 | Other | lineage4.3.3 | None | SRR5817693 | Other | La1.8.1 | None | DRR261117 | Other | lineage4.1 | None | SRR7236393 | Other | La1.8.1 | None | ERR2515328 | Other | lineage4.3.4.2.1 | za | SRR8600055 | Other | La1.8.1 | None | SRR8073652 | Other | La1.8.1 | None | SRR26112650 | Other | lineage4 | None | SRR5216869 | Other | La1.8.1 | None | SRR26112330 | Other | lineage4.5 | None | SRR28409339 | Other | lineage3.1.2 | None | SRR28501932 | Other | La1.7.1 | None | SRR28501943 | Other | La1.7.1 | None | SRR28409486 | Other | lineage4.3.4.1 | None | SRR28501930 | Other | La1.7.1 | None | ERR12976167 | Other | La1.2 | None | SRR28409674 | Other | La3 | None | SRR28409358 | Other | lineage4.1.2.1 | None | SRR7496553 | Other | lineage4.7 | us | ERR11811421 | Other | lineage3 | None | ERR11811421 | Other | lineage3 | None | ERR13291507 | Other | La1.2.BCG | None | ERR13291582 | Other | lineage4.5 | None | ERR13291585 | Other | lineage4.3.4.2 | None | SRR7617654 | Other | La1.8.1 | None | SRR5216734 | Other | La1.8.1 | None | ERR3803809 | Other | lineage4.6.2.2 | None | SRR5216915 | Other | La1.8.1 | None | SRR26111898 | Other | La1.8.1 | None | SRR19428513 | Other | lineage4.3.4.2.1 | None | SRR17077294 | Other | La1.7.1 | None | SRR8073672 | Other | La1.8.1 | None | SRR1791741 | Other | La1.8.1 | None | SRR16058625 | Other | lineage4.6.2.2 | None | SRR23174273 | Other | La1.8.1 | None | SRR5817684 | Other | La1.8.1 | None | ERR9125490 | Other | lineage4.5 | None | ERR3132079 | HR-TB | lineage2.2.1 | None | ERR9786358 | Other | lineage4.6.2.2 | None | SRR1792084 | Other | La1.8.1 | None | SRR18912996 | Other | lineage4.2.1 | None | SRR19158674 | Other | lineage3 | None | SRR21685346 | Other | lineage3 | None | SRR26111897 | Other | lineage3 | None | SRR7617703 | Other | La1.8.1 | None | ERR9125838 | Other | lineage3 | None | ERR8773900 | Other | lineage4.3.4.2 | None | SRR5642717 | Other | La3 | None | SRR10305616 | Pre-XDR-TB | lineage4.5 | None | ERR5979414 | MDR-TB | lineage3.1.2.1 | None | SRR23174478 | Other | La1.8.1 | None | SRR16370610 | Other | lineage2.2.1 | None | SRR16370619 | Other | lineage4 | None | SRR18391767 | Other | La1.7.1 | es | SRR7236344 | Other | La1.7.1 | None | SRR16100728 | Other | lineage3 | None | ERR9125674 | RR-TB | lineage3.1.1 | None | SRR8600026 | Other | La1.8.1 | None | SRR1792113 | Other | La1.8.1 | None | SRR21722114 | Other | lineage3 | None | SRR23174426 | Other | La1.8.1 | None | SRR7236236 | Other | La1.8.1 | None | SRR1791847 | Other | La1.8.1 | None | SRR7240032 | Other | La1.8.1 | None | SRR14296354 | Other | La1.8.1 | None | SRR14296370 | Other | La1.8.1 | None | SRR24799227 | Other | lineage3.1.2.1 | None | ERR9786868 | Other | lineage4.3.4.2;lineage6.1.3 | None | ERR4195848 | HR-TB | lineage4.3.2 | None | SRR21576577 | RR-TB | lineage4.5 | None | SRR16370262 | Other | lineage3 | None | SRR19575907 | Other | lineage4.3.4.2 | None | ERR9901122 | Other | lineage4.6.2.2 | None | SRR14296364 | Other | La1.8.1 | None | SRR16058130 | Other | lineage3 | None | SRR5642712 | Other | La3 | None | ERR1193848 | Other | lineage4.3.3 | cg | SRR5817714 | Other | La1.8.1 | None | SRR16058246 | Other | lineage3 | None | SRR14296335 | Other | La1.8.1 | None | SRR7240377 | Other | La1.8.1 | None | ERR3256197 | MDR-TB | lineage4.3.4.2 | ph | ERR3404374 | Other | La1.7.1 | None | SRR1792312 | Other | La1.8.1 | None | SRR6855851 | Other | lineage4.3.4.2.1 | None | ERR1465875 | MDR-TB | lineage4.8 | None | SRR1791935 | Other | La1.8.1 | None | ERR9786698 | Other | lineage4.6.2.2 | None | SRR7240401 | Other | La1.7.1 | None | SRR10993950 | Other | La1.6 | None | ERR3256126 | MDR-TB | lineage4.3.4.2 | ph | SRR7240222 | Other | La1.8.1 | None | ERR7361956 | Other | lineage4.3.4.2.1 | None | SRR16370228 | Other | lineage4.3.4.2 | None | ERR9786182 | Other | lineage4.6.2.2 | None | SRR23174487 | Other | La1.8.1 | None | SRR2101715 | Other | lineage4.3.4.2.1 | None | SRR17111248 | Other | La2 | None | ERR3256259 | MDR-TB | lineage4.3.4.2 | ph | SRR19320496 | Other | lineage4.1.2.1 | None | SRR14296221 | Other | La1.8.1 | None | SRR8600272 | Other | La1.8.1 | None | ERR2516070 | MDR-TB | lineage4.8.1 | za | SRR7240517 | Other | La1.8.1 | None | SRR1792215 | Other | La1.7.1 | None | ERR3639801 | MDR-TB | lineage3.1.2.1 | None | SRR1792280 | Other | La1.8.1 | None | SRR7617820 | Other | La1.8.1 | None | SRR5216870 | Other | La1.8.1 | None | SRR28409683 | Other | lineage3.1.2 | None | SRR28409625 | Other | lineage3 | None | SRR28409312 | Other | lineage3 | None | SRR28170826 | Other | La1.2.BCG | None | SRR28409405 | Other | lineage4.3.4.2 | None | SRR28375406 | Other | La1.2.BCG | None | SRR28501936 | Other | La1.7.1 | None | SRR28409337 | Other | lineage3 | None | SRR28409355 | Other | lineage3.1.2.1 | None | SRR28409558 | Other | La1.2.BCG | None | SRR28409676 | Other | lineage3 | None | ERR12976113 | Other | La1.2 | None | ERR1971869 | Other | lineage7 | et | ERR11811463 | Other | lineage3 | None | ERR11811411 | Other | lineage4.3.4.2.1 | None | SRR28741152 | MDR-TB | lineage4.5 | None | SRR28741152 | MDR-TB | lineage4.5 | None | SRR28741153 | MDR-TB | lineage4.5 | None | SRR28741153 | MDR-TB | lineage4.5 | None | SRR29666874 | Other | lineage4.1.2 | None | SRR29690812 | Other | La1.8.1 | None | ERR9786597 | Other | lineage4.6.2.2 | None | SRR7236416 | Other | La1.8.1 | None | SRR1791914 | Other | La1.8.1 | None | SRR6982031 | Other | lineage4.1.2.1 | None | SRR1792085 | Other | La1.8.1 | None | SRR8600173 | Other | La1.8.1 | None | SRR13199735 | Other | La1.2 | None | ERR9786280 | Other | lineage4.3.4.2 | None | ERR553229 | Other | lineage4.3.3 | cg | ERR10748477 | MDR-TB | lineage4.3.3 | None | SRR3675478 | Other | lineage3.1.1 | gb | ERR9125885 | Other | lineage3 | None | SRR6982117 | RR-TB | lineage4.8.1 | None | SRR1792093 | Other | La1.8.1 | None | SRR26112208 | Other | lineage4.1 | None | ERR551048 | Other | lineage3.1.1 | cg | SRR12634541 | Other | lineage4.3.4.2 | None | SRR7240385 | Other | La1.8.1 | None | ERR9786834 | Other | lineage4.6.2.2 | None | SRR7240051 | Other | La1.7.1 | None | ERR9786927 | Other | lineage4.3.4.2 | None | SRR8600180 | Other | La1.8.1 | None | SRR5657483 | Other | La1.8.1 | mx | SRR8073634 | Other | La1.8.1 | None | SRR1792203 | Other | La1.7.1 | None | SRR7236135 | Other | La1.8.1 | None | SRR21658559 | Other | lineage4.6.2.2 | None | SRR16058186 | Other | La1.2.BCG | None | SRR15296913 | Other | La1.7.1 | None | SRR23174451 | Other | La1.8.1 | None | ERR9786360 | Other | lineage4.3.4.2 | None | ERR2515245 | RR-TB | lineage4.8.1 | za | SRR12554462 | Other | La1.8.1 | None | SRR19428580 | Other | lineage3.1.1;lineage4.3.4.2.1 | None | ERR13291585 | Other | lineage4.3.4.2 | None | ERR13296457 | HR-TB | lineage2.2.1 | None | ERR13432330 | HR-TB | lineage4.6.2.2 | None | ERR11811402 | Other | lineage4.8 | None | ERR11811402 | Other | lineage4.8 | None | ERR13291185 | Other | La1.2.BCG | None | ERR13291221 | Other | lineage4.5 | None | ERR13291254 | Other | lineage4.1.1.1 | None | ERR13291263 | HR-TB | lineage4.8 | None | ERR13291267 | Other | lineage4.8 | None | ERR13291267 | Other | lineage4.8 | None | ERR13291288 | Other | lineage4.5 | None | ERR13291288 | Other | lineage4.5 | None | ERR13291301 | Other | La1.2.BCG | None | ERR13291301 | Other | La1.2.BCG | None | ERR13291341 | Other | lineage3.1.2.1 | None | ERR13291341 | Other | lineage3.1.2.1 | None | ERR13291398 | Other | lineage4.5 | None | ERR13291466 | Other | lineage3 | None | ERR13291466 | Other | lineage3 | None | ERR13291504 | Other | lineage3 | None | ERR13291556 | Other | lineage4.3.4.1 | None | ERR13291573 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291589 | HR-TB | lineage4.3.4.2 | None | ERR13291589 | HR-TB | lineage4.3.4.2 | None | ERR13291539 | Other | La1.2.BCG | None | ERR13291539 | Other | La1.2.BCG | None | ERR13291607 | Other | La1.2.BCG | None | SRR29356799 | Other | lineage3 | None | SRR29356811 | Other | lineage3 | None | SRR29356820 | Other | lineage3 | None | SRR30049950 | Other | lineage3 | None | SRR30049950 | Other | lineage3 | None | SRR30049957 | Other | lineage4.1.2.1 | None | SRR30049957 | Other | lineage4.1.2.1 | None | SRR30146988 | Other | lineage4.3.2 | None | SRR29831045 | Other | lineage4.3.4.2 | None | SRR29831045 | Other | lineage4.3.4.2 | None | SRR29893823 | Other | lineage3 | None | SRR28741140 | MDR-TB | lineage4.5 | None | SRR30340072 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR30340072 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR30180205 | MDR-TB | lineage4.5 | None | SRR30180205 | MDR-TB | lineage4.5 | None | SRR30180360 | MDR-TB | lineage4.5 | None | SRR30180371 | MDR-TB | lineage4.3.4.2 | None | SRR30180371 | MDR-TB | lineage4.3.4.2 | None | SRR30180202 | MDR-TB | lineage4.5 | None | SRR30180202 | MDR-TB | lineage4.5 | None | SRR30180320 | MDR-TB | lineage4.5 | None | SRR30180358 | Pre-XDR-TB | lineage4.5 | None | SRR30180260 | MDR-TB | lineage4.5 | None | SRR30180260 | MDR-TB | lineage4.5 | None | SRR30180427 | MDR-TB | lineage4.5 | None | SRR30180481 | MDR-TB | lineage4.5 | None | SRR30180481 | MDR-TB | lineage4.5 | None | SRR11462901 | Other | La1.8.1 | None | DRR474057 | Other | lineage4.5 | None | ERR9786481 | Other | lineage4.3.4.2 | None | ERR2864245 | MDR-TB | lineage4.3.4.2 | pt | ERR9786085 | Other | lineage3 | None | SRR7236398 | Other | La1.8.1 | None | SRR3142010 | Other | lineage4.1.2.1 | None | SRR13199730 | Other | La1.7.1 | None | ERR9125500 | Other | lineage4.5 | None | SRR21576604 | RR-TB | lineage4.5 | None | SRR26112172 | Other | lineage3 | None | SRR18391765 | Other | La1.7.1 | es | SRR21710722 | Other | lineage5.3 | None | ERR9786988 | Other | lineage4.3.4.2 | None | SRR23174455 | Other | La1.8.1 | None | SRR21576576 | MDR-TB | lineage4.5 | None | SRR1791836 | Other | La1.8.1 | None | SRR7240305 | Other | La1.8.1 | None | SRR7236271 | Other | La1.8.1 | None | ERR3801614 | Other | lineage4.3.4.2 | None | SRR16057929 | Other | lineage3 | None | SRR23174491 | Other | La1.8.1 | None | ERR9786914 | MDR-TB | lineage4.3.4.2 | None | ERR766222 | Other | La1.2.BCG | None | ERR9125527 | Other | lineage4.6.2.2 | None | SRR21576685 | MDR-TB | lineage4.5 | None | SRR13199744 | Other | La1.7.1 | None | SRR16278257 | Other | La1.4 | None | SRR2101340 | Other | lineage4.1.2.1 | None | SRR17111252 | Other | La2 | None | ERR2515140 | Other | lineage3.1.1 | za | SRR6855902 | Other | lineage3 | None | SRR26112035 | Other | lineage3 | None | SRR13888766 | Other | La2 | None | SRR17163488 | MDR-TB | lineage3.1.1 | None | SRR21820121 | Other | lineage2.2.1 | None | ERR2199931 | Other | lineage4.3.4.2.1 | sz | SRR21658534 | Other | lineage3 | None | ERR2199926 | Other | lineage4.3.4.2.1 | sz | SRR7240142 | Other | La1.8.1 | None | ERR551512_ERR551513_ERR551511 | MDR-TB | lineage4.3.4.2 | None | ERR9786401 | Other | lineage4.1 | None | ERR3806853 | Other | lineage4.3.4.2 | None | DRR130106 | Pre-XDR-TB | lineage4.5 | None | SRR8073621 | Other | La1.8.1 | None | SRR5817694 | Other | La1.8.1 | None | SRR7617661 | Other | La1.8.1 | None | ERR2515916 | Other | lineage4.3.4.2.1 | za | SRR17111247 | Other | La2 | None | SRR23174255 | Other | La1.8.1 | None | ERR3639800 | Pre-XDR-TB | lineage3 | None | SRR7240394 | Other | La1.7.1 | None | SRR7617429 | Other | La1.8.1 | None | ERR9786250 | Other | lineage4.6.2.2 | None | SRR14296363 | Other | La1.8.1 | None | SRR26112123 | Other | lineage4.3.4.2 | None | ERR3806453 | Other | lineage4.3.4.2 | None | ERR9786542 | HR-TB | lineage4.6.2.2 | None | ERR3803799 | Other | lineage4.6.2.2 | None | SRR7240369 | Other | La1.8.1 | None | SRR19314702 | HR-TB | lineage4.1.1.1 | None | SRR11462933 | Other | La1.8.1 | None | SRR1792090 | Other | La1.8.1 | None | ERR3324356 | Other | lineage4.1 | None | ERR3256254 | MDR-TB | lineage4.3.4.2 | ph | SRR1791782 | Other | La1.8.1 | None | SRR21661645 | Other | lineage4.5 | None | SRR1791749 | Other | La1.8.1 | None | SRR10305618 | Pre-XDR-TB | lineage4.5 | None | ERR9125506 | Other | lineage3.1.2 | None | SRR25167916 | Other | La1.7.1 | None | ERR2884613 | Other | lineage4.3.3 | es | ERR2515582 | Other | lineage4.3.4.2.1 | za | SRR21728713 | Other | lineage3 | None | SRR13199725 | Other | La1.7.1 | None | SRR14296407 | Other | La1.8.1 | None | ERR9121306 | Other | lineage4.1.2.1 | None | SRR5657400 | Other | La1.8.1 | mx | ERR2515560 | MDR-TB | lineage4.3.3 | za | SRR21576686 | MDR-TB | lineage4.5 | None | SRR6896186 | Other | lineage4.3.4.2.1 | None | SRR2101406 | Other | lineage4.3.3 | None | DRR261073 | Other | lineage4.1 | None | ERR11811411 | Other | lineage4.3.4.2.1 | None | SRR29356606 | Other | lineage3 | None | SRR29356628 | Other | lineage3 | None | SRR29356629 | Other | lineage3 | None | SRR29356629 | Other | lineage3 | None | SRR29356701 | HR-TB | lineage3.1.2.1 | None | SRR29356724 | Other | lineage3.1.2 | None | SRR29356735 | Other | lineage3 | None | SRR29356728 | Other | La1.7.1 | None | SRR29881214 | Other | lineage4.1.2.1 | None | SRR28741136 | MDR-TB | lineage4.5 | None | SRR28741142 | MDR-TB | lineage4.5 | None | SRR28741151 | MDR-TB | lineage4.5 | None | SRR28741151 | MDR-TB | lineage4.5 | None | SRR28741150 | MDR-TB | lineage4.5 | None | SRR28741150 | MDR-TB | lineage4.5 | None | SRR29893827 | Other | lineage4.3.4.2 | None | SRR29893827 | Other | lineage4.3.4.2 | None | ERR13110318 | HR-TB | lineage4.3.4.2 | None | ERR13110316 | Other | lineage4.3.4.2 | None | SRR28741149 | MDR-TB | lineage4.5 | None | SRR28741149 | MDR-TB | lineage4.5 | None | SRR16278265 | Other | La1.8.1 | None | ERR10867788 | MDR-TB | lineage4.3.3 | None | SRR16089638 | HR-TB | lineage4 | None | SRR5216757 | Other | La1.8.1 | None | SRR8600006 | Other | La1.8.1 | None | SRR1791915 | Other | La1.8.1 | None | SRR18391691 | Other | La1.7.1 | es | SRR13180333 | Other | lineage4.6.2.2 | None | SRR16097549 | Other | lineage3 | None | SRR13199720 | Other | La1.7.1 | None | SRR21722253 | Other | lineage4.3.4.2 | None | SRR26112442 | Other | lineage3 | None | SRR1791998 | Other | La1.8.1 | None | SRR8600034 | Other | La1.8.1 | None | SRR21677055 | Other | lineage3 | None | SRR21576651 | RR-TB | lineage4.5 | None | SRR7240186 | Other | La1.8.1 | None | SRR5216717 | Other | La1.8.1 | None | SRR19428584 | Other | lineage4.3.4.2 | None | SRR18914169 | Other | lineage4.3.4.2 | None | SRR26112700 | Other | lineage4.5 | None | SRR1792450 | Other | La1.8.1 | None | DRR261094 | Other | lineage1.1.1.1 | None | SRR26112313 | Other | lineage4.6.2.2 | None | SRR7240295 | Other | La1.8.1 | None | SRR26112070 | Other | lineage4 | None | SRR13591425 | Other | lineage4.3.4.2 | None | ERR9125817 | Other | lineage3 | None | ERR10867701 | MDR-TB | lineage4.3.3 | None | ERR4407477 | HR-TB | lineage3.1.1 | None | DRR473987 | Other | lineage4.5 | None | SRR14296350 | Other | La1.8.1 | None | SRR14296233 | Other | La1.8.1 | None | ERR3801617 | Other | lineage4.3.4.2 | None | SRR26112258 | Other | lineage4.1.2 | None | SRR21677247 | HR-TB | lineage4.3.4.2 | None | ERR9125809 | Other | lineage1.1.2 | None | ERR9786227 | Other | lineage4.6.2.2 | None | SRR5681158 | Other | lineage4.4.1.1 | ca | SRR7240512 | Other | La1.7.1 | None | SRR10251186 | Other | La3 | None | ERR2515924 | Pre-XDR-TB | lineage4.3.3 | za | ERR9786970 | Other | lineage4.3.4.1 | None | SRR5216900 | Other | La1.8.1 | None | SRR14296161 | Other | La1.8.1 | None | SRR7236356 | Other | La1.8.1 | None | SRR2101494 | Other | lineage4.3.4.2.1 | None | SRR6982274 | Other | lineage4.9 | None | ERR9121158 | Other | La2 | None | SRR1791936 | Other | La1.8.1 | None | SRR7240200 | Other | La1.8.1 | None | SRR6896498 | Other | lineage4.3.3 | None | SRR23174453 | Other | La1.8.1 | None | ERR1971857 | Other | lineage7 | et | SRR5216777 | Other | La1.8.1 | None | SRR7617804 | Other | La1.8.1 | None | SRR8065070 | Other | La1.3 | None | SRR21576729 | MDR-TB | lineage4.5 | None | SRR26112056 | Other | La1.8.1 | None | SRR19226963 | Other | lineage4.5 | None | SRR16058482 | Other | La1.2.BCG | None | SRR1791777 | Other | La1.8.1 | None | ERR552979 | MDR-TB | lineage4.3.4.2 | None | SRR11294537 | Other | La1.8.1 | None | ERR9786474 | Other | lineage4.3.4.2 | None | ERR12057449 | Other | lineage4.3.4.2 | None | SRR2101549 | Other | lineage3.1.1 | None | SRR1792291 | Other | La1.8.1 | None | SRR26112298 | Other | lineage4.3.4.2 | None | ERR4195875 | Other | lineage4.3.4.2 | None | SRR17111228 | Other | La2 | None | ERR3806650 | Other | lineage4.6.2.2 | None | SRR16100247 | Other | lineage3.1.2 | None | ERR4195833 | Other | lineage4.3.4.2 | None | DRR188810 | Other | lineage2.2.1 | None | SRR26112491 | Other | lineage3 | None | SRR26112624 | Other | lineage4.5 | None | SRR19324979 | Other | lineage3 | None | SRR16058667 | Other | lineage4.5 | None | SRR7240263 | Other | La1.8.1 | None | SRR13199749 | Other | La1.7.1 | None | SRR19324965 | Other | lineage3 | None | SRR23174483 | Other | La1.8.1 | None | SRR8065087 | Other | La1.3 | None | SRR21657442 | Other | lineage4.8 | None | SRR16370594 | Other | lineage4.5 | None | SRR7617729 | Other | La1.8.1 | None | SRR16100233 | MDR-TB | lineage3.1.2 | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR10748489 | MDR-TB | lineage4.3.3 | None | SRR1792404 | Other | La1.8.1 | None | ERR2199970 | Other | lineage4.3.4.2.1 | sz | SRR16058623 | Other | lineage3.1.1 | None | SRR5681180 | Other | lineage4.4.1.1 | ca | SRR16089912 | HR-TB | lineage4.8 | None | SRR8600057 | Other | La1.8.1 | None | SRR21576733 | MDR-TB | lineage4.5 | None | SRR17111229 | Other | La1.7 | None | SRR3675566 | Other | lineage4.1.2.1 | None | SRR17111230 | Other | La2 | None | SRR8600060 | Other | La1.8.1 | None | SRR14296194 | Other | La1.8.1 | None | SRR18391702 | Other | La1.7.1 | es | SRR1791983 | Other | La1.8.1 | None | ERR9125600 | Other | lineage2.2.1 | None | ERR9786326 | Other | lineage4.8 | None | ERR9125709 | HR-TB | lineage4.3.4.2 | None | SRR5817716 | Other | La1.8.1 | None | SRR7240431 | Other | La1.7.1 | None | ERR9786487 | Other | lineage4.1 | None | SRR16058676 | MDR-TB | lineage2.2.1 | None | SRR16058179 | HR-TB | lineage4.3.4.2 | None | SRR8065086 | Other | La1.3 | None | SRR5486071 | Other | La1.2 | None | SRR14296343 | Other | La1.8.1 | None | SRR1792155 | Other | La1.7.1 | None | DRR474147 | Other | lineage4.5 | None | SRR8073674 | Other | La1.8.1 | None | SRR5216819 | Other | La1.8.1 | None | SRR19317526 | Other | lineage2.2.1 | None | ERR9125636 | Other | La1.2 | None | SRR7240247 | Other | La1.7.1 | None | SRR1791829 | Other | La1.8.1 | None | SRR1791788 | Other | La1.8.1 | None | SRR28170778 | Other | La1.2.BCG | None | SRR5216896 | Other | La1.8.1 | None | SRR1792208 | Other | La1.7.1 | None | SRR25581813 | MDR-TB | lineage3.1.2 | None | SRR21658558 | Other | lineage3.1.3 | None | ERR9786703 | Other | lineage4.3.4.2 | None | ERR1193835 | Other | lineage4.3.4.2 | br | ERR10869501 | MDR-TB | lineage4.3.3 | None | SRR6982537 | Other | lineage4.3.4.2.1 | None | SRR14296145 | Other | La1.8.1 | None | SRR16101263 | Other | lineage4.5 | None | SRR26112130 | Other | lineage2.2.1 | None | SRR25167920 | Other | La1.7.1 | None | SRR16278232 | Other | La1.4 | None | ERR9125739 | Other | lineage4.1.2.1 | None | SRR25167918 | Other | La1.7.1 | None | SRR19224231 | Other | lineage4.3.4.2 | None | SRR13199724 | Other | La1.7.1 | None | SRR26112315 | Other | lineage4.3.2 | None | ERR1193846 | Other | lineage4.3.3 | cg | SRR23174205 | Other | La1.8.1 | None | SRR11294521 | Other | La1.7.1 | None | ERR9125558 | Other | La1.2.BCG | None | ERR552952 | Other | lineage4.3.1 | None | ERR4195722 | Other | lineage4.3.4.2 | None | SRR1791872 | Other | La1.8.1 | None | SRR22424846 | Other | lineage3 | None | SRR10305946 | Other | lineage4.5 | None | SRR14296155 | Other | La1.8.1 | None | SRR3675278 | Other | lineage4.1.2.1 | gb | SRR21685105 | Other | lineage3.1.2.1 | None | SRR6896467 | Other | lineage4.3.4.2.1 | None | DRR188917 | Other | lineage4.3.4.2 | None | SRR1792216 | Other | La1.7.1 | None | ERR3256232 | Other | lineage1.2.1.2.1 | ph | SRR16058662 | MDR-TB | lineage2.2.1 | None | SRR7240041 | Other | La1.8.1 | None | SRR18910163 | Other | lineage3 | None | ERR9786676 | Other | lineage4.3.4.2 | None | SRR2101744 | Other | lineage4.3.4.2.1 | None | SRR1791855 | Other | La1.8.1 | None | SRR7617631 | Other | La1.8.1 | None | ERR9786480 | Other | lineage4.3.4.1 | None | SRR18912990 | Other | lineage2.2.1 | None | SRR1792389 | Other | La1.8.1 | None | SRR16058564 | Other | lineage3 | None | SRR26112429 | Other | lineage3.1.2 | None | SRR18391752 | Other | La1.7.1 | es | SRR14296359 | Other | La1.8.1 | None | DRR474066 | Other | lineage2.2.1 | None | ERR7821172 | Other | lineage4.3.4.2 | None | SRR1792178 | Other | La1.8.1 | None | SRR7236220 | Other | La1.8.1 | None | SRR18909913 | Other | lineage4.3.4.2 | None | SRR14296124 | Other | La1.8.1 | None | ERR9125707 | Other | lineage3 | None | SRR16058167 | Other | La1.2.BCG | None | SRR2101607 | HR-TB | lineage4.9 | None | SRR19324813 | Other | lineage4.8 | None | SRR26112096 | Other | lineage3 | None | SRR18911916 | Other | lineage2.2.1 | None | SRR18391678 | Other | La1.7.1 | es | ERR9786807 | Other | lineage4.3.4.2 | None | SRR7617380 | Other | La1.8.1 | None | ERR9786209 | Other | lineage4.6.2.2 | None | SRR21576637 | MDR-TB | lineage4.5 | None | SRR7236355 | Other | La1.8.1 | None | SRR17592368 | Other | La1.2.BCG | None | SRR1791905 | Other | La1.8.1 | None | SRR13888756 | Other | La2 | None | SRR28170708 | Other | La1.2.BCG | None | SRR16057977 | Other | lineage2.2.1 | None | SRR1792010 | Other | La1.8.1 | None | ERR1971853 | Other | lineage7 | et | SRR16096975 | Other | lineage4 | None | ERR9125914 | Other | lineage3 | None | DRR188749 | Other | lineage2.2.1 | None | SRR1792149 | Other | La1.8.1 | None | SRR26112477 | Other | lineage2.2.1.2;lineage4.3.4.2 | None | SRR16058642 | Other | lineage1.1.2 | None | ERR2515377 | Other | lineage2.2.1 | za | DRR188591 | Other | lineage4.5 | None | SRR16370417 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR7240185 | Other | La1.8.1 | None | SRR1791891 | Other | La1.7.1 | None | ERR9121225 | Other | lineage4.3.4.2 | None | SRR16089616 | Other | lineage4.5 | None | ERR1971856 | Other | lineage7 | et | SRR14296183 | Other | La1.8.1 | None | ERR9125901 | Other | lineage4.5 | None | SRR5817708 | Other | La1.8.1 | None | ERR9896102 | Other | lineage3 | None | ERR9786729 | Other | lineage4.3.4.2 | None | ERR7821142 | Other | lineage4.3.4.2.1 | None | SRR7240276 | Other | La1.8.1 | None | SRR18391721 | Other | La1.7.1 | es | SRR7236215 | Other | La1.8.1 | None | SRR23174183 | Other | La1.8.1 | None | SRR1792082 | Other | La1.8.1 | None | SRR6855986 | Other | lineage4.3.3 | None |
|---|
