lineage | Count |
---|---|
89 | |
La1.8.1 | 1 |
lineage4.5 | 1 |
lineage2 | 2 |
lineage6.3;lineage2.2.1 | 1 |
lineage2.2 | 2 |
lineage2.2.1 | 5 |
lineage3;lineage2.2.1 | 1 |
lineage4;lineage2.2.1 | 1 |
lineage3 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage1.2.1.1 | 1 |
lineage4 | 26 |
lineage4.3.4 | 2 |
lineage4.1.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage4.9 | 12 |
lineage4.2.1 | 1 |
lineage4.1 | 1 |
lineage4.1.2.1 | 5 |
La2 | 1 |
lineage4.7 | 1 |
lineage4.1.2 | 1 |
lineage4.1.3 | 2 |
La1.2 | 1 |
lineage3.1.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.8 | 1 |
lineage4.6.2.2 | 1 |
lineage4.1.1 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage6.1.3 | 1 |
spoligotype | Count |
---|---|
None | 170 |
ID | Drug resistance | Lineage | Country iso2 | SRR14801749 | Sensitive | None | SRR19304036 | HR-TB | None | SRR1791747 | Other | La1.8.1 | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20969677 | HR-TB | lineage2 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR25827778 | MDR-TB | lineage2.2.1 | None | SRR25827407 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR25827561 | Pre-XDR-TB | lineage4;lineage2.2.1 | None | SRR3675465 | HR-TB | None | SRR25827566 | Sensitive | lineage3 | None | SRR3675488 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675311 | Other | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675246 | Sensitive | lineage4 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3675550 | Other | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | ERR176740 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR7496472 | Other | None | SRR5341313 | HR-TB | None | ERR4818929 | HR-TB | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR6045526 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341330 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2653224 | MDR-TB | lineage4.3.4.1 | None | ERR2660539 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6046046 | Other | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6044855 | Other | lineage4.9 | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045327 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | SRR6046460 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046482 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046802 | Other | lineage4 | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | ERR323045 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323039 | HR-TB | None | ERR1035122 | Sensitive | None | ERR323053 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR3283036 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3797064 | Sensitive | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR3797069 | Other | None | ERR3445503 | HR-TB | None | ERR363426 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798431 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797474 | Other | None | ERR4798406 | HR-TB | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4810741 | HR-TB | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811142 | MDR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR6866410 | Sensitive | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR6866639 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736865 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR9119669 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9634265 | Sensitive | None | ERR9786569 | Other | lineage4.8 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | ERR9787197 | Other | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR10808805 | Sensitive | None | SRR1172310 | HR-TB | None | SRR10809074 | Sensitive | lineage4 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1174897 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | None |
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