SRR1144733
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25515671
|
HR-TB
|
lineage2.2.2
|
None
|
SAMN02360617
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1049028
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049039
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1049069
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR26387472
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1213853
|
MDR-TB
|
lineage2.2.2
|
kr
|
SRR2075820
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR19320531
|
Sensitive
|
lineage2.2.2
|
None
|
DRR474181
|
Sensitive
|
lineage2.2.2
|
None
|
SRR21727567
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11080987
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1020005
|
Sensitive
|
lineage2.2.2
|
None
|
DRR188986
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02360576
|
MDR-TB
|
lineage2.2.2
|
kr
|
SRR19267893
|
Sensitive
|
lineage2.2.2
|
None
|
SRR26387470
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR26387474
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28170731
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1047984
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049075
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR552177
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1048856
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048863
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1049038
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1049074
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13191369
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13243548
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR067486
|
Sensitive
|
lineage2.2.2
|
None
|
DRR130191
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11083149
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013633
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6397509
|
Sensitive
|
lineage2.2.2
|
ca
|
ERR11466470
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR5535923
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR671753
|
MDR-TB
|
lineage2.2.2
|
cn
|
SRR28467054
|
HR-TB
|
lineage2.2.2
|
None
|
SRR28239978
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28385882
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1202581
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28467045
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194014
|
HR-TB
|
lineage2.2.2
|
None
|
SRR6397393
|
Sensitive
|
lineage2.2.2
|
ca
|
ERR13191057
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013555
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28859629
|
Sensitive
|
lineage2.2.2
|
None
|
ERR3132080
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR067488
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1049071
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13243562
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195578
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13243569
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13231249
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1202641
|
Sensitive
|
lineage2.2.2
|
None
|
SRR5067406
|
HR-TB
|
lineage2.2.2
|
vn
|
SRR9613552
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR152760
|
HR-TB
|
lineage2.2.2
|
None
|
ERR176628
|
Sensitive
|
lineage4.4.1.1
|
mw
|
ERR11465297
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR13194010
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13195613
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195573
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195559
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6397700
|
Sensitive
|
lineage2.2.2
|
ca
|
SRR1048979
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013672
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049055
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1202593
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1208213
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1208257
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28467067
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28467071
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29055382
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13194117
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02360551
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02360558
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR1213859
|
MDR-TB
|
lineage2.2.2
|
kr
|
SRR23691399
|
Sensitive
|
lineage2.2.2
|
None
|
SRR21675639
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1048857
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11466001
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SAMN02360582
|
Sensitive
|
lineage2.2.2
|
kr
|
SRR26387495
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02398703
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR29093893
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13193935
|
Sensitive
|
lineage2.2.2
|
None
|
SRR26112099
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02398698
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
DRR185008
|
Sensitive
|
lineage2.2.2
|
vn
|
SRR1013632
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1050530
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02398696
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR13192113
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194025
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR3132092
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13264803
|
Other
|
lineage2.2.2
|
None
|
SRR1202636
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013558
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4810671
|
Sensitive
|
lineage2.2.2
|
cn
|
DRR346649
|
Sensitive
|
lineage2.2.2
|
None
|
ERR028623
|
HR-TB
|
lineage2.2.2
|
None
|
SRR26387497
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR23862060
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13194006
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195617
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1048843
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049070
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11081550
|
MDR-TB
|
lineage2.2.2
|
None
|
DRR189013
|
Sensitive
|
lineage2.2.2
|
None
|
SRR26112739
|
Sensitive
|
lineage2.2.2
|
None
|
SRR6397369
|
Sensitive
|
lineage2.2.2
|
ca
|
ERR11069054
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4811265
|
Sensitive
|
lineage2.2.2
|
None
|
SRR22251534
|
HR-TB
|
lineage2.2.2
|
None
|
SRR22249552
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28859992
|
Sensitive
|
lineage2.2.2
|
None
|
SRR29093106
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR234211
|
Sensitive
|
lineage2.2.2
|
vn
|
SRR29093912
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1144783
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13191370
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR069947
|
Sensitive
|
lineage2.2.2
|
None
|
ERR1213857
|
MDR-TB
|
lineage2.2.2
|
kr
|
ERR551834
|
Sensitive
|
lineage2.2.2
|
de
|
ERR13243575
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1208415
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13254328
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR16058414
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR067489
|
Sensitive
|
lineage2.2.2
|
None
|
ERR2516219
|
RR-TB
|
lineage2.2.2
|
be
|
SRR18910194
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1013662
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR2075817
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013553
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2516692
|
MDR-TB
|
lineage2.2.2
|
nl
|
SRR1208362
|
Sensitive
|
lineage2.2.2
|
None
|
SRR15368757
|
Sensitive
|
lineage2.2.2
|
None
|
ERR3132099
|
HR-TB
|
lineage2.2.2
|
None
|
SRR17657975
|
HR-TB
|
lineage2.2.2
|
None
|
ERR11465407
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR6824584
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
DRR474161
|
Sensitive
|
lineage2.2.2
|
None
|
SRR29016754
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1049025
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13191054
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195616
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13296451
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013668
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049046
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11050001
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013631
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR346650
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013649
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013683
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1202582
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11044957
|
Other
|
lineage2.2.2
|
None
|
SRR1013651
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18591741
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1049019
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048854
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR067468
|
Sensitive
|
lineage2.2.2
|
None
|
SRR21820125
|
Sensitive
|
lineage2.2.2
|
None
|
SRR14520034
|
Sensitive
|
lineage2.2.2
|
None
|
ERR4822356
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013564
|
MDR-TB
|
lineage2.2.2
|
None
|
DRR474196
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1208289
|
Sensitive
|
lineage2.2.2;lineage4.9
|
None
|
SRR16089538
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11465709
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR26399480
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02360594
|
MDR-TB
|
lineage2.2.2
|
kr
|
ERR403246
|
Sensitive
|
lineage2.2.2
|
None
|
DRR185014
|
HR-TB
|
lineage2.2.2
|
vn
|
SRR1208407
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13284063
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6152985
|
HR-TB
|
lineage2.2.2
|
ca
|
SRR1202568
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013627
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13191059
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02360608
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR13291987
|
HR-TB
|
lineage2.2.2
|
None
|
ERR4195671
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4822348
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013680
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516737
|
Sensitive
|
lineage2.2.2
|
pe
|
SRR1049059
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR15369025
|
Sensitive
|
lineage2.2.2;lineage4.4.2
|
None
|
SRR1013659
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048850
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29225202
|
HR-TB
|
lineage2.2.2
|
None
|
SRR29225201
|
HR-TB
|
lineage2.2.2
|
None
|
SRR30182678
|
Sensitive
|
lineage2.2.2
|
None
|
SRR21732568
|
HR-TB
|
lineage2.2.2
|
None
|
ERR3132100
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4828684
|
HR-TB
|
lineage2.2.2
|
vn
|
SAMN02398704
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1013559
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR26387496
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13231273
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13191056
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194055
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13265196
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29093955
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13191053
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1144780
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7796667
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR474022
|
Sensitive
|
lineage2.2.2
|
None
|
DRR473920
|
Other
|
lineage2.2.2
|
None
|
SRR1013606
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013648
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013658
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013682
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093380
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28385876
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13193933
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13195561
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13193998
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2503414
|
Sensitive
|
lineage2.2.2
|
fi
|
SRR2075822
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR184887
|
MDR-TB
|
lineage2.2.2
|
vn
|
SRR1013628
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR11033603
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11138629
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11138642
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11138650
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR473773
|
Sensitive
|
lineage2.2.2
|
None
|
SRR125301
|
Sensitive
|
lineage2.2.2
|
None
|
SRR070000
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13194429
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194665
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13232609
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21820122
|
Sensitive
|
lineage2.2.2
|
None
|
SRR22249954
|
MDR-TB
|
lineage2.2.2
|
None
|
DRR034497
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11466004
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR15368707
|
HR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR1013634
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13265081
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13291275
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11466516
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR2075818
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1202515
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02360561
|
MDR-TB
|
lineage2.2.2
|
kr
|
SAMN02360583
|
HR-TB
|
lineage2.2.2
|
None
|
ERR11043658
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR067484
|
Sensitive
|
lineage2.2.2
|
None
|
SRR26387473
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02360604
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR21709347
|
HR-TB
|
lineage2.2.2
|
None
|
SRR13180214
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR1213830
|
Sensitive
|
lineage2.2.2
|
kr
|
SRR25784784
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013645
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048858
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR152761
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1013622
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013674
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR26387475
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4828693
|
HR-TB
|
lineage2.2.2
|
vn
|
SRR7496541
|
Sensitive
|
lineage2.2.2
|
us
|
ERR9124885
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR163940
|
Sensitive
|
lineage4.4.1.1
|
mw
|
SRR26112813
|
Sensitive
|
lineage2.2.2
|
None
|
SRR26387499
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11069075
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR7796668
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR034502
|
Sensitive
|
lineage2.2.2
|
None
|
DRR130190
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR067534
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02398699
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR8758892
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1049005
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195555
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28385884
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1144749
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18591744
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR5067372
|
Other
|
lineage2.2.1;lineage2.2.2
|
vn
|
SRR22251278
|
Sensitive
|
lineage2.2.2
|
None
|
SRR069922
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11464978
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR3639775
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2516143
|
Pre-XDR-TB
|
lineage2.2.2
|
es
|
SRR1202510
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02360619
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02398693
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR125309
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1048842
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR24083648
|
Sensitive
|
lineage2.2.2
|
None
|
SRR6930929
|
HR-TB
|
lineage2.2.2
|
None
|
ERR13194027
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13195574
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195575
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR22251545
|
Sensitive
|
lineage3
|
None
|
ERR025439
|
HR-TB
|
lineage2.2.2
|
nl
|
ERR3132278
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02360555
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1013557
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144737
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR867556
|
Sensitive
|
lineage2.2.2
|
None
|
SRR21686596
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013552
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR067502
|
Sensitive
|
lineage2.2.2
|
None
|
SRR070032
|
Sensitive
|
lineage2.2.2
|
None
|
SRR19325663
|
Sensitive
|
lineage2.2.2
|
None
|
SRR6397796
|
Sensitive
|
lineage2.2.2
|
ca
|
ERR11138653
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR400424
|
Sensitive
|
lineage2.2.2
|
gb
|
SRR26936978
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR474026
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13191065
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194049
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR3132091
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13266782
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6397561
|
Sensitive
|
lineage2.2.2
|
ca
|
ERR3132074
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13260010
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR069930
|
Sensitive
|
lineage2.2.2
|
None
|
DRR189003
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11083136
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02360593
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR13193755
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13193753
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02360559
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02360591
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360601
|
MDR-TB
|
lineage2.2.2
|
kr
|
ERR11083056
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013669
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013629
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1020006
|
Sensitive
|
lineage2.2.2
|
None
|
ERR552176
|
HR-TB
|
lineage2.2.2
|
None
|
SRR29052658
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13296461
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13258464
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093120
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR28240136
|
Sensitive
|
lineage2.2.2
|
None
|
SRR18913795
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013679
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6397697
|
MDR-TB
|
lineage2.2.2
|
ca
|
SRR29093687
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13191623
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194003
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13245556
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28239462
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13195510
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13191076
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13194428
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195379
|
MDR-TB
|
lineage2.2.2
|
None
|
DRR130098
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1049020
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1202546
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1202551
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13258387
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.9
|
None
|
ERR13265086
|
MDR-TB
|
lineage2.2.2
|
None
|
DRR188714
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11798524
|
MDR-TB
|
lineage2.2.2
|
None
|
DRR474190
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13195610
|
HR-TB
|
lineage2.2.2
|
None
|
SRR1013593
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28467020
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29225203
|
HR-TB
|
lineage2.2.2
|
None
|
ERR13296459
|
HR-TB
|
lineage2.2.2
|
None
|
ERR13265094
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093941
|
HR-TB
|
lineage2.2.2
|
None
|
SRR17657925
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29681403
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093358
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR30333231
|
Sensitive
|
lineage2.2.2
|
None
|
ERR1035135
|
Other
|
lineage2.2.2
|
vn
|
ERR1213827
|
Sensitive
|
lineage2.2.2
|
kr
|
SRR2075823
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360610
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02360613
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1013621
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1020013
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049045
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR069982
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1048864
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1049044
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21709865
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28385881
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13230057
|
Other
|
lineage2.2.2
|
None
|
SRR29093119
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093366
|
XDR-TB
|
lineage2.2.2;lineage4.4.2
|
None
|
SRR29053346
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13265638
|
Sensitive
|
lineage2.2.2
|
None
|
ERR10465955
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13191075
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13232608
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194024
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR30182741
|
Sensitive
|
lineage2.2.2
|
None
|
SRR25784783
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1144813
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048978
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11465581
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR22873599
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR125306
|
Sensitive
|
lineage2.2.2
|
None
|
DRR473917
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11465567
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1049062
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4822343
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29440784
|
Sensitive
|
lineage2.2.2
|
None
|
SRR21714042
|
Sensitive
|
lineage2.2.2
|
None
|
SRR29056220
|
Sensitive
|
lineage2.2.2
|
None
|
SRR16088007
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02360557
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR11466515
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1013544
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093919
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049066
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR30182620
|
HR-TB
|
lineage2.2.2
|
None
|
SAMN02360603
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
DRR130096
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5535919
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR26112807
|
Sensitive
|
lineage2.2.2
|
None
|
ERR1213865
|
MDR-TB
|
lineage2.2.2
|
kr
|
SRR1013650
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13195056
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13296441
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013626
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29050941
|
HR-TB
|
lineage2.2.2
|
None
|
ERR11049669
|
Other
|
lineage2.2.2
|
None
|
SRR21710587
|
HR-TB
|
lineage2.2.2
|
None
|
ERR13191093
|
MDR-TB
|
lineage2.2.2
|
None
|
DRR473915
|
HR-TB
|
lineage2.2.2
|
None
|
ERR11082603
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11465988
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1049024
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR24799220
|
HR-TB
|
lineage2.2.2
|
None
|
ERR11466439
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR1144807
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3132282
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1049029
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144776
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR26112763
|
Sensitive
|
lineage2.2.2
|
None
|
SRR29093109
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28467064
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR18591743
|
HR-TB
|
lineage2.2.2
|
None
|
SAMN02360556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR130192
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR867562
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013560
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5073586
|
Other
|
lineage2.2.2
|
vn
|
ERR11466477
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR21685347
|
Sensitive
|
lineage2.2.2
|
None
|
ERR163946
|
Sensitive
|
lineage4.4.1.1
|
mw
|
DRR130074
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4811238
|
Sensitive
|
lineage2.2.2
|
None
|
ERR1213851
|
MDR-TB
|
lineage2.2.2
|
kr
|
SRR1047996
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1013675
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360590
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02398712
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR11464979
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR211992
|
Sensitive
|
lineage4.4.1.1
|
mw
|
ERR11138648
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21820124
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013644
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR26397807
|
Sensitive
|
lineage2.2.2
|
None
|
SRR29681255
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR130065
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.9
|
None
|
DRR185108
|
Sensitive
|
lineage2.2.2
|
vn
|
DRR130165
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360595
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11138658
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR8217909
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR16370661
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1049063
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1208348
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013673
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02398711
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1049068
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1202596
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11464951
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR1049058
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516446
|
Sensitive
|
lineage2.2.2
|
pe
|
SRR1049047
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5709906
|
MDR-TB
|
lineage2.2.2
|
th
|
SRR29093357
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013543
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6397611
|
Sensitive
|
lineage2.2.2
|
ca
|
SRR1202595
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11465278
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR13292447
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048859
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11138637
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6789616
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR15368825
|
Other
|
lineage2.2.2;lineage4.5
|
None
|
ERR028358
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1208259
|
Sensitive
|
lineage2.2.2
|
None
|
ERR3132076
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048990
|
Sensitive
|
lineage2.2.2
|
None
|
SRR18054793
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5535921
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1710079
|
Sensitive
|
lineage2.2.2
|
cn
|
ERR4828544
|
Other
|
lineage2.2.1;lineage2.2.2
|
vn
|
SAMN02398713
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1048851
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02360596
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR067547
|
Sensitive
|
lineage2.2.2
|
None
|
ERR3132087
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11043495
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR069934
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1020014
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049067
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR164012
|
Sensitive
|
lineage4.4.1.1
|
mw
|
SRR21677250
|
Sensitive
|
lineage2.2.2
|
None
|
SAMN02360616
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR29093925
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1020007
|
Sensitive
|
lineage2.2.2
|
None
|
ERR13246864
|
Sensitive
|
lineage2.2.2
|
None
|
ERR11775684
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28385880
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29093939
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13230578
|
Sensitive
|
La1.7;lineage2.2.2
|
None
|
SRR1049054
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13194859
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13191098
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13194084
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6152960
|
HR-TB
|
lineage2.2.2
|
ca
|
SRR5065656
|
Sensitive
|
lineage2.2.2
|
vn
|
DRR473807
|
Sensitive
|
lineage2.2.2
|
None
|
DRR189080
|
Sensitive
|
lineage2.2.2
|
None
|
ERR4811378
|
Sensitive
|
lineage2.2.2
|
None
|
DRR034509
|
Sensitive
|
lineage2.2.2
|
None
|
DRR130095
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28409364
|
HR-TB
|
lineage2.2.2
|
None
|
SRR21676322
|
HR-TB
|
lineage2.2.2
|
None
|
SRR069941
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28409608
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11466114
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11081081
|
Sensitive
|
lineage2.2.2
|
None
|
SRR28240191
|
Sensitive
|
lineage2.2.2
|
None
|
SRR29093926
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13195604
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21887758
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMEA2534464
|
HR-TB
|
lineage2.2.2
|
kr
|
SRR1013594
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02360615
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1144796
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR18591742
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR185024
|
Other
|
lineage2.2.2
|
None
|
SRR1013551
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1213864
|
HR-TB
|
lineage2.2.2
|
kr
|
SRR1013605
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1048989
|
Sensitive
|
lineage2.2.2
|
None
|
SRR1013625
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR130097
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR261126
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21677625
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21661639
|
Sensitive
|
lineage2.2.2
|
None
|
SRR5535925
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13191366
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13191062
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1144790
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6153273
|
Sensitive
|
lineage2.2.2
|
ca
|
ERR11466187
|
Sensitive
|
lineage4.4.1.1
|
None
|
SRR067493
|
Sensitive
|
lineage2.2.2
|
None
|
SRR15368753
|
Other
|
lineage2.2.2;lineage4.5
|
None
|