SRR857283
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799852
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28045254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044680
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800361
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR857288
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827481
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR13261088
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827619
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799040
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798413
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800271
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796740
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797816
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267032
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798522
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516842
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR25827338
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515566
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515563
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351268
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044949
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1168962
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827446
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045152
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28046131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046124
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772811
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772810
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772491
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772548
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772608
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3148223
|
MDR-TB
|
lineage4.1.2.1
|
mx
|
ERR4799280
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799946
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800454
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772669
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799717
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260890
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13266675
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515743
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798858
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799262
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800073
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1180157
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR22175212
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR857290
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR857298
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR10500311
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR13261982
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796869
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266067
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266841
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827484
|
Pre-XDR-TB
|
lineage1;lineage2.2.1;lineage3;lineage4
|
None
|
ERR4797039
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5314268
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798476
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798749
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799864
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827324
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR7162977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267103
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799294
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175215
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1181404
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13266141
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796440
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR9971241
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798827
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR9806967
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4799769
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796596
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799393
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799594
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799929
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266654
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796456
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796560
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796623
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797172
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799848
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799938
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1175055
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261557
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261958
|
Pre-XDR-TB
|
lineage2.2;lineage3
|
None
|
ERR13262050
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11050041
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800024
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800582
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28351360
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516886
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4798956
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR857281
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR857287
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13267138
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR13261393
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22175174
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4796516
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1172835
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1180429
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827749
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
SRR25827875
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3
|
None
|
ERR4797156
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12708409
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4796655
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798588
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800428
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800598
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796988
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516853
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4796694
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799911
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR1035006
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR4798958
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800189
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25389418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6930922
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR4798261
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2515924
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4797314
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798287
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR9971153
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799845
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516008
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799382
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827631
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR857302
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799477
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797620
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796967
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827328
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4799444
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25515565
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284203
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424943
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798731
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799060
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799087
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799722
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800231
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800561
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02586034
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR13261252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261980
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR130079
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992879
|
XDR-TB
|
lineage4.3.3
|
None
|
SAMN02585965
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4798058
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175181
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR857296
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9971169
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827293
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR25827402
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
SRR25827711
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
SRR1173294
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798767
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798825
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800091
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13286036
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR7911430
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4830964
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR857280
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827393
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911206
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR9970983
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9993080
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22175170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827527
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
SRR1181172
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827427
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3;lineage4
|
None
|
SRR28351502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515988
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4797070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797679
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29772374
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772479
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772487
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772554
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772377
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1183967
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1196525
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827727
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1184375
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR22175216
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827399
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR13266555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796645
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796652
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR1180445
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02586040
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586063
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR4798460
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798882
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798929
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR857284
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28351475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797551
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798647
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799157
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1196524
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4831017
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR28044681
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797778
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797951
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798025
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266729
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351484
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797586
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797640
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798252
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798264
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798394
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02586045
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR10726050
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181108
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180403
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1181352
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971090
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28351579
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262168
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13266073
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13262074
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827529
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR4797921
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798023
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798181
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798831
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9992635
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4797719
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR10315554
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827334
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
SRR16178828
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827385
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR833196
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5918120
|
XDR-TB
|
lineage4.3.3
|
za
|
ERR13266940
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261078
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056162
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799234
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266155
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827522
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR833100
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11349192
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR18054811
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798695
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798589
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827676
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266584
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797391
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796774
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796857
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827540
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1180281
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4800066
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR10380135
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796360
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR1196547
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488985
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4799206
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR857299
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28044929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827834
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797147
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351175
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798642
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827316
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.2.2.2
|
None
|
SRR25827296
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3
|
None
|
ERR13266497
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796660
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02585997
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR4799719
|
XDR-TB
|
lineage2.2.1
|
in
|
SAMN02350481
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR25827720
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4797820
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR857291
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4831090
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4800571
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799260
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28351577
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513241
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4797665
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797705
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798709
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266746
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827363
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR1172980
|
HR-TB
|
lineage4.3.3
|
None
|
SRR1196671
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827394
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4.9
|
None
|
SRR25827456
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800616
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173072
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR22175256
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1140949
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4799826
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827674
|
XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
SRR5341349
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798195
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266624
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351168
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827739
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4799661
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796416
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827329
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796460
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796998
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799646
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1183101
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4796361
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173351
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4800377
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9993015
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796588
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351166
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351479
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267008
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12796624
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351530
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351282
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341257
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR11773824
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1140960
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02585973
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR28045929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7361993
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29772411
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796590
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796928
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797160
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797581
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02584606
|
MDR-TB
|
lineage4.3.3
|
md
|
SRR5341237
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827702
|
MDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
SRR25827777
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28351575
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13288955
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR13266666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796399
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796930
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796921
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798426
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798694
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799209
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5917968
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR9993120
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR25827502
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
None
|
SRR25827732
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827620
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827765
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827827
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR28045924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351352
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992651
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796654
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796683
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796973
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797355
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800006
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800337
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830931
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13261128
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772758
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28858649
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515564
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796737
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02585964
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR25827521
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13290867
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266550
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184305
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4797672
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11465836
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796324
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797692
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798255
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827650
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.1.2;lineage4.2.2;lineage4.9
|
None
|
ERR13261992
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799364
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517046
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4797802
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797702
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799791
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827345
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
SRR1180353
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25515236
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02053804
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR4796518
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6982057
|
HR-TB
|
lineage4.3.3
|
None
|
SRR25827359
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.8
|
None
|
ERR4796925
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798748
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831029
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22424780
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798259
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797631
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797700
|
Pre-XDR-TB
|
lineage1.1.3;lineage2.2.1
|
in
|
SRR1184115
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13261096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799542
|
HR-TB
|
lineage2.2.1
|
None
|
SRR25827649
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873534
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
SRR857294
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13267040
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796328
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR7911581
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR13266755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267123
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261248
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173311
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799210
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797558
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799765
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1184335
|
HR-TB
|
lineage4.3.3
|
None
|
ERR4799525
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3639708
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827346
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799552
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827633
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR11082644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266927
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798723
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR1181145
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4797072
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR386992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796468
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799235
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798056
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1181008
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR7070569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800531
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797770
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29055959
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798753
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261199
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261210
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796561
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR29772680
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772451
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797000
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799384
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799392
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR4830865
|
MDR-TB
|
lineage4.3.3
|
sz
|
SRR16157125
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4800043
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1196555
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4830947
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SAMN02585957
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR3055712
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827880
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798405
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1173442
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4800209
|
HR-TB
|
lineage2.2.1
|
in
|
SRR10315589
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9971250
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4796529
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797762
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800333
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800626
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827801
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266712
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827685
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827368
|
XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR13262026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13262161
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797528
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827665
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4797144
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827780
|
XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR25827362
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4797315
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797632
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424936
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799214
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR13267120
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796996
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827358
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.8
|
None
|
ERR4798205
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798667
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797331
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827371
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR4799002
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9992894
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8975682
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR1144793
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799252
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4799890
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797617
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1180328
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1180422
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830558
|
XDR-TB
|
lineage4.3.3
|
None
|
SRR25827614
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3;lineage4.9
|
None
|
ERR13266599
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796974
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796646
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798972
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799595
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1019143
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798048
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1196568
|
HR-TB
|
lineage4.3.3
|
None
|
SRR25827768
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4
|
None
|
ERR4796679
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796479
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799303
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13267049
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13290857
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11461690
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR4797961
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796347
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3.1.2.1
|
in
|
ERR4797106
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799713
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799839
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796843
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799174
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798651
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1181355
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1184328
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02585978
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SAMN02586009
|
MDR-TB
|
lineage4.3.3
|
za
|
SRR1173411
|
Other
|
lineage4.3.3
|
None
|
SRR1184293
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1196518
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4800576
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796914
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798423
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796803
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798928
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798061
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799725
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR9971126
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR13266118
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266091
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266109
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772370
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510718
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
SRR25515567
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351161
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827598
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799034
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799029
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4829879
|
MDR-TB
|
lineage4.3.3
|
it
|
SRR25827774
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799578
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9992661
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798706
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798919
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827300
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800449
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800479
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799953
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351464
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827696
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827355
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
SAMN02586102
|
HR-TB
|
lineage4.3.3
|
za
|
ERR13261347
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827559
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799136
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800539
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799433
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796833
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796951
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797066
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797186
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797469
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798342
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798459
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799268
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13266997
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830927
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827668
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4798319
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797277
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827595
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260876
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4796905
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797846
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266607
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797550
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799968
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800080
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799918
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796918
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799181
|
HR-TB
|
lineage2.2.1
|
in
|
ERR11488790
|
MDR-TB
|
lineage3
|
None
|
ERR4797674
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR9993020
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4797600
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797944
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798994
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1183042
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1166193
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR9971285
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4798580
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR857300
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799090
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799149
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798191
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830955
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796824
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799609
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827879
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797668
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798503
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799356
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6855944
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1019161
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25827290
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799131
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4797952
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799315
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5341367
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMN02350485
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
ERR4830559
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4831061
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR13266650
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971180
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4797834
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR8975801
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage4.3.3
|
None
|
ERR4796488
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797131
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797321
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797468
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827308
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827646
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR25827605
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR4797696
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3148191
|
MDR-TB
|
lineage4.1.2.1
|
mx
|
ERR4799259
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797137
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827697
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827429
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4.9
|
None
|
SRR28045939
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798175
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1181262
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR9971179
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR4799437
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR857286
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1181260
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4830921
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796812
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797492
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827623
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8649112
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25389417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181321
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798265
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798100
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798232
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799521
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1173080
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21732097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797544
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|