Rv3596c - c.495G>A
Drug resistance types
40 Sensitive
4 RR-TB
29 HR-TB
19 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
6 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 5 |
| La3;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage1.1.2 | 54 |
| lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 8 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| 1 | |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage2.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.2.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 99 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28045724 | Sensitive | lineage3 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1180340 | Sensitive | lineage1.1.2 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4796671 | Sensitive | lineage1.1.2 | in | SRR1172228 | Sensitive | lineage1.1.2 | None | SRR29772823 | MDR-TB | lineage1.1.2 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR8380918 | Sensitive | lineage1.1.2 | in | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR22249814 | Sensitive | lineage3 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4797599 | Sensitive | lineage1.1.2 | in | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR8380878 | Sensitive | lineage1.1.2 | in | SRR29772757 | MDR-TB | lineage1.1.2 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1183160 | HR-TB | lineage1.1.2 | None | ERR400448 | Other | lineage1.1.2 | gb | SRR1174841 | HR-TB | lineage1.1.2 | None | ERR4796494 | Sensitive | lineage1.1.2 | None | SRR1169574 | Sensitive | lineage1.1.2 | None | SRR21732922 | Sensitive | lineage1.1.2 | None | ERR13266431 | Sensitive | lineage1.1.2 | None | SRR28046288 | Sensitive | lineage1.1.2 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1640750 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR22251059 | Sensitive | lineage1.1.2 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1180461 | Sensitive | lineage1.1.2 | None | SRR1169491 | MDR-TB | lineage1.1.2 | None | SRR8380886 | Sensitive | lineage1.1.2 | in | SRR1172157 | MDR-TB | lineage1.1.2 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR1180285 | Sensitive | lineage1.1.2 | None | SRR28044835 | Sensitive | lineage1.1.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR1180266 | MDR-TB | lineage1.1.2 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR1180488 | MDR-TB | lineage1.1.2 | None | SRR1180248 | HR-TB | lineage1.1.2 | None | SAMN02599026 | MDR-TB | lineage1.1.2 | in | SRR1172293 | Sensitive | lineage1.1.2 | None | SRR6045992 | Sensitive | lineage3 | None | SRR21732832 | Sensitive | lineage1.1.2 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR2512415 | Sensitive | lineage1.1.2 | gb | SRR1180479 | Sensitive | lineage1.1.2 | None | ERR13289561 | Sensitive | lineage3 | None | SAMN02599018 | Sensitive | lineage1.1.2 | None | SRR1510040 | Sensitive | lineage1.2.1.2.1 | None | SRR8375622 | MDR-TB | lineage1.1.2 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR28045066 | Sensitive | lineage1.1.2 | None | SRR1180470 | HR-TB | lineage1.1.2 | None | ERR4820240 | Sensitive | lineage1.1.2 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798846 | Sensitive | lineage1.1.2 | in | SRR1172737 | Sensitive | lineage1.1.2 | None | SRR6045574 | Sensitive | lineage1.1.2 | gb | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SAMN02599035 | HR-TB | lineage1.1.2 | in | SRR1175061 | Sensitive | lineage1.1.2 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR1180335 | HR-TB | lineage1.1.2 | None | SRR1172316 | HR-TB | lineage1.1.2 | None | SAMN02599086 | Sensitive | lineage1.1.2 | in | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1169575 | Sensitive | lineage1.1.2 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | SAMN02599038 | Sensitive | lineage1.1.2 | in | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SAMN02598959 | HR-TB | lineage1.1.2 | in | SRR1169565 | HR-TB | lineage1.1.2 | None | ERR11068141 | Sensitive | lineage1.1.2 | None | ERR4799596 | HR-TB | lineage1.1.2 | in | SRR1169490 | HR-TB | lineage1.1.2 | None | SRR21732771 | Sensitive | lineage3 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR18149497 | Sensitive | lineage1.1.2 | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR29231405 | Sensitive | lineage1.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR13261291 | Sensitive | lineage1.1.2 | None |
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