Rv3596c - c.495G>A

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
42 Sensitive 3 RR-TB 30 HR-TB 18 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 7 Other
lineage Counts
lineage Count
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage1.1.2 56
M.canetti;lineage2.1;lineage4.9 8
lineage3 5
lineage4.1.1.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage4.9 1
1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 3
La3;M.canetti;lineage2.1;lineage4.9 1
M.canetti;lineage1 1
M.canetti;lineage2.1;lineage4.1.2.1 1
M.canetti;lineage2.1;lineage6.3 1
lineage1.2.1.2.1 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.1;lineage4.9 1
lineage2.2.1 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage2.2 1
lineage1.1 1
M.canetti;lineage4.3.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 101
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR1180488 MDR-TB lineage1.1.2 None
SRR1180248 HR-TB lineage1.1.2 None
SRR29772757 MDR-TB lineage1.1.2 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR13266431 Sensitive lineage1.1.2 None
SRR6045992 Sensitive lineage3 None
SRR6325447 HR-TB lineage4.1.1.1 None
SRR1172293 Sensitive lineage1.1.2 None
SRR1169565 HR-TB lineage1.1.2 None
SRR28868340 Other lineage1.1.2 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8380918 Sensitive lineage1.1.2 in
SRR1180470 HR-TB lineage1.1.2 None
ERR4820240 Sensitive lineage1.1.2 None
SRR3675487 Other M.canetti;lineage4.9 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR29231405 Sensitive lineage1.1.2 None
SRR28045724 Sensitive lineage3 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR22251059 Sensitive lineage1.1.2 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR4796671 Sensitive lineage1.1.2 in
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1169491 MDR-TB lineage1.1.2 None
SRR1175061 Sensitive lineage1.1.2 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1172157 MDR-TB lineage1.1.2 None
SRR28044835 Sensitive lineage1.1.2 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR22249814 Sensitive lineage3 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR1172316 HR-TB lineage1.1.2 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR8380878 Sensitive lineage1.1.2 in
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR1174841 HR-TB lineage1.1.2 None
SRR8375622 MDR-TB lineage1.1.2 None
ERR11068141 Sensitive lineage1.1.2 None
ERR9125100 Sensitive lineage1.2.1.2.1 None
ERR4796494 Sensitive lineage1.1.2 None
SRR1169574 Sensitive lineage1.1.2 None
SRR21732832 Sensitive lineage1.1.2 None
ERR4799596 HR-TB lineage1.1.2 in
ERR4797599 Sensitive lineage1.1.2 in
ERR4798846 Sensitive lineage1.1.2 in
SRR1510040 Sensitive lineage1.2.1.2.1 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR18149497 Sensitive lineage1.1.2 None
ERR2512415 Sensitive lineage1.1.2 gb
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR13261291 Sensitive lineage1.1.2 None
SRR1180340 Sensitive lineage1.1.2 None
SRR1172737 Sensitive lineage1.1.2 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR1180461 Sensitive lineage1.1.2 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1172228 Sensitive lineage1.1.2 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1180285 Sensitive lineage1.1.2 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1169575 Sensitive lineage1.1.2 None
SRR1183160 HR-TB lineage1.1.2 None
SRR6325442 HR-TB lineage4.1.1;lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR21732922 Sensitive lineage1.1.2 None
SRR1169490 HR-TB lineage1.1.2 None
SRR21732771 Sensitive lineage3 None
SAMN02598959 HR-TB lineage1.1.2 in
SRR1180479 Sensitive lineage1.1.2 None
SAMN02599086 Sensitive lineage1.1.2 in
SAMN02599026 MDR-TB lineage1.1.2 in
SAMN02599038 Sensitive lineage1.1.2 in
SAMN02599035 HR-TB lineage1.1.2 in
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR28046288 Sensitive lineage1.1.2 None
SRR28045066 Sensitive lineage1.1.2 None
ERR400448 Other lineage1.1.2 gb
SRR6045574 Sensitive lineage1.1.2 gb
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR8380886 Sensitive lineage1.1.2 in
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR13289561 Sensitive lineage3 None
ERR3077978 Other lineage1.1 None
ERR13289574 Sensitive lineage1.1.2 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR29772823 MDR-TB lineage1.1.2 None
SRR1180335 HR-TB lineage1.1.2 None
SRR1180266 MDR-TB lineage1.1.2 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
SAMN02599018 Sensitive lineage1.1.2 None
ERR278594 HR-TB lineage2.1;lineage4.9 None