Rv3793 - c.-562G>C

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
44 Sensitive 1 RR-TB 7 HR-TB 2 MDR-TB 0 Pre-XDR-TB 0 XDR-TB 20 Other
lineage Counts
lineage Count
La3 50
lineage2.2.1.1 1
3
lineage2.2.1 3
La3;lineage2.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 2
lineage4.9 2
La3;lineage2.2.1 2
La3;lineage4 1
M.canetti;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7;M.canetti;lineage4.9 1
lineage2.1;lineage4.9 3
spoligotype Counts
spoligotype Count
None 74
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4799735 Sensitive La3 in
SRR1183106 RR-TB lineage2.2.1.1 None
SRR1184381 MDR-TB None
ERR987722 MDR-TB None
ERR234659 Other None
ERR4814352 Other lineage2.2.1 None
ERR4817463 Sensitive La3 gb
ERR2512859 Sensitive La3 gb
ERR2514957 Sensitive La3 gb
ERR2517593 Sensitive La3 nl
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR11067178 Sensitive La3 None
ERR11049303 Sensitive La3 None
ERR11049551 Sensitive La3 None
SRR28858579 Sensitive La3 None
ERR11050970 Sensitive La3 None
ERR234675 Sensitive La3 None
SRR7131127 Other La3 None
ERR11068278 Sensitive La3 None
ERR11067940 Sensitive La3 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4829235 Other La3 None
SRR28868577 Other La3 None
ERR4821658 Other La3 None
ERR351884 Sensitive La3 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR26112574 Other La3 None
SRR27450476 Sensitive La3 None
ERR176643 Other La3;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR176751 Other lineage4.9 None
ERR4796515 Sensitive La3 in
ERR4797736 Sensitive La3 in
SRR7069245 Sensitive La3 None
SRR1184294 Other lineage4.9 None
ERR4799643 Sensitive La3 in
ERR4799479 Sensitive La3 in
SRR6046736 Sensitive La3;lineage2.2.1 gb
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4796505 Sensitive La3 in
ERR234682 Sensitive La3;lineage4 None
ERR6375119 Sensitive La3 None
SRR10321149 Sensitive La3 None
SRR7070245 Sensitive La3 None
SRR7070371 Sensitive La3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR4816585 Other lineage2.2.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR330723 Other La3 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR2101161 Sensitive La3 None
SRR2101222 Sensitive La3 None
ERR4815417 Other La3 gb
ERR2512389 Sensitive La3 gb
ERR2513195 Sensitive La3 gb
ERR2513671 Sensitive La3 gb
ERR2514172 Sensitive La3 gb
SRR6044858 Sensitive La3 gb
SRR5341333 Other lineage2.1;lineage4.9 None
SRR6046131 Sensitive La3 None
ERR294241 Sensitive La3 None
ERR11049411 Sensitive La3 None
ERR11049107 Other La3 None
ERR13289674 Sensitive La3 None
ERR4819164 Sensitive La3 None
ERR11081198 Other La3 None
ERR234676 Sensitive La3 None
ERR13289968 Sensitive La3;lineage2.2.1 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR30182773 Sensitive La3 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4800046 Sensitive La3 in
SRR7070522 Sensitive La3 None
SRR1183144 Other lineage2.2.1 None