Run ID: ERR046844
Sample name:
Date: 31-03-2023 08:53:37
Number of reads: 5244511
Percentage reads mapped: 99.18
Strain: lineage1.2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 0.98 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 0.99 |
lineage1.2.2.1 | Indo-Oceanic | NA | RD239 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
embB | 4247368 | p.Phe285Leu | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 0.99 |
gyrB | 6112 | p.Met291Ile | missense_variant | 0.99 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 0.99 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491027 | p.Asn82Thr | missense_variant | 0.22 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 0.98 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.34 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.38 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 0.97 |
rpoC | 763886 | c.517C>A | synonymous_variant | 0.97 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.31 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 0.99 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302976 | p.Val16Phe | missense_variant | 0.99 |
Rv1258c | 1406750 | c.591C>A | synonymous_variant | 0.17 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 0.99 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.24 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.22 |
inhA | 1674892 | p.Asn231Asp | missense_variant | 0.26 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.99 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.99 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.41 |
PPE35 | 2170156 | p.Ala153Pro | missense_variant | 0.19 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 0.99 |
kasA | 2519353 | p.Phe413Leu | missense_variant | 0.97 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.3 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.2 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 0.99 |
ahpC | 2726550 | p.Gln120Lys | missense_variant | 0.2 |
ahpC | 2726756 | c.564C>G | synonymous_variant | 0.25 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.17 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.18 |
thyX | 3067995 | c.-50A>C | upstream_gene_variant | 0.19 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339273 | c.156T>G | synonymous_variant | 0.34 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.18 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 0.99 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
Rv3236c | 3612137 | p.Gly327Ala | missense_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.33 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.18 |
rpoA | 3878238 | p.Asp90Glu | missense_variant | 0.17 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.18 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.27 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4240750 | c.888C>T | synonymous_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 0.97 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.25 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.28 |
embA | 4245969 | p.Pro913Ser | missense_variant | 0.99 |
embB | 4247646 | p.Glu378Ala | missense_variant | 0.98 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.22 |
embB | 4249019 | p.Gly836Arg | missense_variant | 0.99 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 0.99 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.16 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 0.99 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.21 |
ethR | 4327912 | p.Arg122Gly | missense_variant | 0.27 |
ethR | 4328030 | p.Ala161Val | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.97 |
gid | 4407873 | c.330G>T | synonymous_variant | 0.99 |
gid | 4408179 | c.24G>T | synonymous_variant | 0.98 |