Run ID: ERR046898
Sample name:
Date: 31-03-2023 08:56:11
Number of reads: 4614614
Percentage reads mapped: 99.22
Strain: lineage1.2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage1 | Indo-Oceanic | EAI | RD239 | 0.98 |
lineage1.2.2 | Indo-Oceanic | EAI1 | RD239 | 1.0 |
lineage1.2.2.1 | Indo-Oceanic | NA | RD239 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5075 | c.-165C>T | upstream_gene_variant | 1.0 |
gyrB | 6112 | p.Met291Ile | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8377 | p.Asp359Gly | missense_variant | 0.15 |
gyrA | 8452 | p.Ala384Val | missense_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575932 | p.Glu195Asp | missense_variant | 0.24 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.32 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.38 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763884 | p.Ala172Val | missense_variant | 1.0 |
rpoC | 763886 | c.517C>A | synonymous_variant | 1.0 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.24 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777399 | p.Thr361Arg | missense_variant | 0.17 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416450 | p.Gly300Cys | missense_variant | 1.0 |
embR | 1416937 | p.His137Gln | missense_variant | 1.0 |
embR | 1417019 | p.Cys110Tyr | missense_variant | 1.0 |
embR | 1417233 | c.115C>T | synonymous_variant | 0.15 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.29 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102540 | p.Ala168Gly | missense_variant | 0.19 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.2 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167871 | c.2742G>C | synonymous_variant | 0.18 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168205 | p.Pro803Gln | missense_variant | 1.0 |
PPE35 | 2169379 | p.Phe412Val | missense_variant | 0.2 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.38 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.26 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.27 |
ahpC | 2725954 | c.-239C>T | upstream_gene_variant | 0.24 |
ahpC | 2726051 | c.-142G>A | upstream_gene_variant | 1.0 |
ahpC | 2726114 | c.-79C>T | upstream_gene_variant | 1.0 |
ahpC | 2726756 | c.564C>G | synonymous_variant | 0.26 |
folC | 2746186 | c.1413G>C | synonymous_variant | 0.21 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.28 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448714 | p.Asp71His | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474597 | c.591C>A | synonymous_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fprA | 3475280 | p.Val425Gly | missense_variant | 0.27 |
Rv3236c | 3612804 | p.Ala105Thr | missense_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.36 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.23 |
alr | 3840268 | p.Thr385Pro | missense_variant | 0.29 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.2 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.19 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.23 |
clpC1 | 4040517 | p.Val63Ala | missense_variant | 1.0 |
panD | 4044307 | c.-26A>G | upstream_gene_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4240750 | c.888C>T | synonymous_variant | 1.0 |
embC | 4241042 | p.Asn394Asp | missense_variant | 1.0 |
embC | 4241056 | c.1194C>G | synonymous_variant | 0.28 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.36 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.2 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.37 |
embC | 4242827 | p.Leu989Val | missense_variant | 0.23 |
embA | 4243532 | c.300C>A | synonymous_variant | 1.0 |
embA | 4245969 | p.Pro913Ser | missense_variant | 1.0 |
embA | 4246275 | p.Ala1015Thr | missense_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.24 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 0.99 |
ubiA | 4269469 | p.Pro122Gln | missense_variant | 1.0 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.24 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4326439 | p.Asn345Lys | missense_variant | 1.0 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.3 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
whiB6 | 4338603 | c.-82C>T | upstream_gene_variant | 1.0 |
gid | 4407532 | p.Ala224Gly | missense_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407873 | c.330G>T | synonymous_variant | 1.0 |
gid | 4408124 | p.Ala27Pro | missense_variant | 1.0 |