Run ID: ERR2510774
Sample name:
Date: 31-03-2023 18:56:02
Number of reads: 2295917
Percentage reads mapped: 99.34
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 779229 | c.-749A>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1407532 | c.-192G>A | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154477 | c.1635G>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2715432 | c.-100C>T | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
alr | 3841568 | c.-148G>A | upstream_gene_variant | 1.0 |
alr | 3841570 | c.-151delA | upstream_gene_variant | 1.0 |
alr | 3841574 | c.-154T>G | upstream_gene_variant | 1.0 |
alr | 3841578 | c.-158G>T | upstream_gene_variant | 1.0 |
alr | 3841582 | c.-162A>G | upstream_gene_variant | 1.0 |
alr | 3841584 | c.-164C>A | upstream_gene_variant | 1.0 |
alr | 3841589 | c.-170delG | upstream_gene_variant | 1.0 |
alr | 3841612 | c.-193_-192insC | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4326106 | c.1368C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407945 | c.258C>T | synonymous_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |