Run ID: ERR2513389
Sample name:
Date: 31-03-2023 19:38:52
Number of reads: 1779423
Percentage reads mapped: 93.41
Strain: lineage3.1.3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
lineage3.1.3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 0.96 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406613 | p.Glu243Ala | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472668 | n.825_829delGGGTT | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472675 | n.830_831insAGAC | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472680 | n.835C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472682 | n.837T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472683 | n.838T>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473235 | n.1390C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475685 | n.2028T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476656 | n.2999G>T | non_coding_transcript_exon_variant | 0.18 |
rpsA | 1834159 | c.618G>A | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 0.96 |
Rv1979c | 2222732 | c.432delT | frameshift_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
thyA | 3074197 | p.Pro92Leu | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4249195 | c.2682C>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4408175 | p.Ala10Pro | missense_variant | 1.0 |